CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25280.1	CDX68112	AT1G75950.1	12795696
AT1G25280.1	CDX73212	AT1G75950.1	12795696
AT1G25280.1	CDX80590	AT1G75950.1	12795696
AT1G25280.1	CDX85931	AT1G75950.1	12795696
AT1G25280.1	CDX87650	AT1G75950.1	12795696
AT1G25280.1	CDY13521	AT1G75950.1	12795696
AT1G25280.1	CDY39073	AT1G75950.1	12795696
AT1G25280.1	CDX68112	AT1G75950.1	25168737
AT1G25280.1	CDX73212	AT1G75950.1	25168737
AT1G25280.1	CDX80590	AT1G75950.1	25168737
AT1G25280.1	CDX85931	AT1G75950.1	25168737
AT1G25280.1	CDX87650	AT1G75950.1	25168737
AT1G25280.1	CDY13521	AT1G75950.1	25168737
AT1G25280.1	CDY39073	AT1G75950.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51990	Canola	cytosol	98.1	97.87
Bra010985.1-P	Field mustard	cytosol	98.82	94.99
CDX84977	Canola	cytosol	89.81	90.24
CDY42119	Canola	cytosol	91.47	88.33
CDY66464	Canola	cytosol	89.34	87.88
AT1G25280.1	Thale cress	cytosol	91.71	86.97
CDY72036	Canola	cytosol	90.76	86.46
CDY13913	Canola	endoplasmic reticulum, extracellular	5.92	83.33
KRH10476	Soybean	cytosol, mitochondrion	75.12	74.24
VIT_12s0055g00460.t01	Wine grape	mitochondrion	74.41	74.06
KRH43964	Soybean	cytosol, mitochondrion	74.41	73.54
PGSC0003DMT400076537	Potato	cytosol	71.8	70.96
Solyc10g046970.1.1	Tomato	mitochondrion	71.56	70.89
PGSC0003DMT400002858	Potato	mitochondrion	71.56	70.89
Solyc01g104670.2.1	Tomato	cytosol	71.33	70.49
CDY13570	Canola	cytosol	69.19	68.71
CDY45959	Canola	cytosol	69.67	68.53
HORVU5Hr1G023650.1	Barley	plastid	38.63	67.63
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	67.77	66.82
CDY65845	Canola	cytosol, mitochondrion	69.43	65.11
CDX87562	Canola	cytosol, mitochondrion	69.43	64.97
Os12t0163400-01	Rice	cytosol	65.88	62.47
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	64.93	62.41
TraesCS5A01G124100.1	Wheat	cytosol	64.93	62.41
TraesCS4D01G110100.1	Wheat	golgi	64.93	62.27
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	64.69	62.05
KXG23034	Sorghum	cytosol, mitochondrion	64.22	62.01
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	64.45	61.82
TraesCS5B01G123800.1	Wheat	golgi	64.22	61.73
CDY10578	Canola	mitochondrion	5.92	59.52
Zm00001d053179_P001	Maize	cytosol	63.03	59.38
EES08030	Sorghum	cytosol, mitochondrion	63.03	58.33
CDY25159	Canola	cytosol	50.95	57.33
CDY46301	Canola	cytosol	51.18	57.14
GSMUA_Achr11P...	Banana	cytosol	54.5	55.42
CDY27467	Canola	cytosol	51.9	55.16
CDY02510	Canola	cytosol	41.94	55.14
CDY55525	Canola	cytosol	52.37	54.98
CDY65687	Canola	cytosol, mitochondrion	48.34	54.55
CDY17085	Canola	cytosol, mitochondrion	50.47	54.06
CDY25719	Canola	cytosol	41.94	53.64
CDY24698	Canola	mitochondrion	44.79	53.54
CDY05258	Canola	mitochondrion	45.26	53.06
CDY17028	Canola	mitochondrion, nucleus	49.53	52.91
CDY25863	Canola	cytosol, mitochondrion	44.08	49.34
CDX92589	Canola	mitochondrion	43.6	49.2
CDY45927	Canola	cytosol, plastid	43.6	49.07
CDY13914	Canola	mitochondrion	24.88	43.03
CDY06747	Canola	cytosol, mitochondrion	50.0	36.51
CDY35067	Canola	nucleus	19.19	20.82
CDY69989	Canola	nucleus	18.96	20.41
CDY17084	Canola	mitochondrion	0.24	0.49

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A078HFD7	EnsemblPlants:CDY36119	ProteinID:CDY36119
ProteinID:CDY36119.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00059959001	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573
ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF45	SUPFAM:SSF54518	SUPFAM:SSF81383
InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0004EE0F0D	SEG:seg	:

Description

BnaA08g19290DTubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFD7]

Coordinates

chrLK032367:-:205722..208727

Molecular Weight (calculated)

47539.1 Da

IEP (calculated)

9.881

GRAVY (calculated)

-0.366

Length

422 amino acids

Sequence
(BLAST)

001: MSFRSIVQDL RDGLGSLSRR SFDFRIHKGK SQGSCEYSSS RDLLSPLIVQ TSRWANLPPE LLLDVIKRLE ESESTWPARK HVVACASVCR SWRAMCQDIV
101: LSPEICGKLT FPVSLKQPGP RDPMIQCFIK RDKSKLTFHL FLCLSPALLV ENGKFLLSAK RTRRTTRTEY IISMDADNIS RSSNSYLGKL RSNFLGTKFL
201: VYDTQPPQNT PSSSSALITD QTSRSRFHSK RVSPKVPSGS YNIAQITYEL NVLGTRGPRR MHCTMNSIPT SSLEPGGSVP NQPDKLVPGR LDESFRNFSS
301: SRFSEMGVVS CEEDQEETSF RPLVLKNKQP RWHEQLQCWC LNFRGRVTVA SVKNFQLVAV RQPQIQGTGA VAAPAHPEQD KVILQFGKVG KDMFTMDYRY
401: PLSAFQAFAI CLSSFDTKLA CE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.