CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021446.1-P	Field mustard	cytosol	99.25	99.25
CDY27467	Canola	cytosol	94.78	95.97
AT2G47900.3	Thale cress	cytosol	90.05	88.94
VIT_01s0010g01060.t01	Wine grape	mitochondrion	11.69	87.04
CDY13913	Canola	endoplasmic reticulum, extracellular	5.97	80.0
VIT_07s0104g01290.t01	Wine grape	cytosol	80.35	79.75
KRH71532	Soybean	cytosol	74.13	74.5
Solyc09g074510.2.1	Tomato	cytosol	72.39	73.48
PGSC0003DMT400029513	Potato	cytosol	72.39	73.48
GSMUA_Achr1P11290_001	Banana	cytosol	71.64	70.94
GSMUA_Achr3P17440_001	Banana	cytosol	70.15	69.98
Os03t0351400-01	Rice	cytosol	50.99	69.26
KXG39376	Sorghum	cytosol, plastid	68.41	68.92
Zm00001d029165_P004	Maize	cytosol, plastid	68.66	68.83
TraesCS4D01G164200.1	Wheat	cytosol, plastid	68.41	68.07
TraesCS4A01G140800.1	Wheat	cytosol, plastid	67.91	67.91
TraesCS4B01G166400.1	Wheat	cytosol, plastid	68.16	67.82
CDY05258	Canola	mitochondrion	56.22	62.78
CDY24698	Canola	mitochondrion	54.48	62.04
Os07t0667000-01	Rice	cytosol	61.94	61.33
TraesCS2D01G122900.1	Wheat	cytosol	55.22	59.36
CDX92589	Canola	mitochondrion	55.22	59.36
TraesCS2A01G120900.1	Wheat	mitochondrion	55.22	59.04
TraesCS2B01G141800.1	Wheat	cytosol	55.47	58.99
EER97690	Sorghum	cytosol	58.46	58.9
CDY13914	Canola	mitochondrion	34.08	56.15
CDY02510	Canola	cytosol	44.03	55.14
Zm00001d007106_P001	Maize	cytosol	42.54	54.81
CDX84977	Canola	cytosol	56.47	54.05
CDY25719	Canola	cytosol	44.03	53.64
CDY25159	Canola	cytosol	50.0	53.6
CDY46301	Canola	cytosol	50.0	53.17
CDY51990	Canola	cytosol	55.47	52.72
CDY66464	Canola	cytosol	55.97	52.45
CDY65687	Canola	cytosol, mitochondrion	48.76	52.41
CDY10578	Canola	mitochondrion	5.47	52.38
CDY36119	Canola	cytosol	54.98	52.37
CDY42119	Canola	cytosol	56.72	52.17
CDY72036	Canola	cytosol	56.47	51.24
VIT_01s0010g01050.t01	Wine grape	cytosol	17.16	51.11
CDY13570	Canola	cytosol	53.73	50.82
CDY17028	Canola	mitochondrion, nucleus	49.5	50.38
CDY45959	Canola	cytosol	53.48	50.12
CDY17085	Canola	cytosol, mitochondrion	49.01	50.0
CDY25863	Canola	cytosol, mitochondrion	45.27	48.28
CDY45927	Canola	cytosol, plastid	45.02	48.27
CDY65845	Canola	cytosol, mitochondrion	53.48	47.78
CDX87562	Canola	cytosol, mitochondrion	53.23	47.45
VIT_00s0426g00050.t01	Wine grape	extracellular	17.66	44.65
CDY06747	Canola	cytosol, mitochondrion	49.01	34.08
Zm00001d029092_P001	Maize	mitochondrion	23.13	26.88
Zm00001d047019_P001	Maize	mitochondrion	23.13	26.88
CDY35067	Canola	nucleus	19.65	20.31
CDY69989	Canola	nucleus	19.65	20.15
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	12.94	18.98
CDY17084	Canola	mitochondrion	0.25	0.49

Protein Annotations

EnsemblPlants:CDY55525	EnsemblPlantsGene:GSBRNA2T00016998001	Gene3D:3.20.90.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR025659	InterPro:Tubby-like_C	InterPro:Tubby_C	PANTHER:PTHR16517
PANTHER:PTHR16517:SF36	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ProteinID:CDY55525	ProteinID:CDY55525.1
SEG:seg	SUPFAM:SSF54518	UniParc:UPI0004EDCC31	UniProt:A0A078J175	MapMan:15.5.21	:

Description

BnaA04g29500DBnaA04g29500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J175]

Coordinates

chrLK033411:+:31012..33022

Molecular Weight (calculated)

44661.6 Da

IEP (calculated)

9.962

GRAVY (calculated)

-0.249

Length

402 amino acids

Sequence
(BLAST)

001: MSFKSLIQEM RGELGSISRK GFGFGRSRSQ RVVQDSCVVP VDAFKQSCWA TMPPELLRDV LVRIEASEDT WPSRKNVVAC AGVCRNWRAL VKEIVKVPQL
101: SSKLTFPISL KQPGPRASSS LLQCYIIRNR TNQTYHLYLA LNQASASNDD GKFLLAAKRF RRPTCTDYII SLSSDDVSRG SSSYIGKLRS NFLGTKFTVY
201: DAQPTNPGAQ VTRTRSTRLL SLKQVSPRVP SGNYPVSHIS YELNVLGSRG PRRMQCVMDA IPASAVEPAG TAPTQTELVH TNLDMFPSFS FFRSKSVRSE
301: SLPQPAQNDG LLVLKNKAPR WHEQLQCWCL NFNGRVTVAS VKNFQLVAAP ENGPAGPEHE NVILQFGKVG KDVFTMDFQY PISAFQAFTI CLSSFDTKIA
401: CE

Best Arabidopsis Sequence Match ( AT2G47900.3 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAAASND DGKFLLAAKR FRRPTCTDYI ISLNCDDVSR GSNTYIGKLR SNFLGTKFTV
201: YDAQPTNPGT QVTRTRSSRL LSLKQVSPRI PSGNYPVAHI SYELNVLGSR GPRRMQCVMD AIPASAVEPG GTAPTQTELV HSNLDSFPSF SFFRSKSIRA
301: ESLPSGPSSA AQKEGLLVLK NKAPRWHEQL QCWCLNFNGR VTVASVKNFQ LVAAPENGPA GPEHENVILQ FGKVGKDVFT MDYQYPISAF QAFTICLSSF
401: DTKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.