Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0010g01050.t01 | Wine grape | cytosol | 50.94 | 60.0 |
| Os03t0351400-01 | Rice | cytosol | 40.25 | 21.62 |
| VIT_07s0104g01290.t01 | Wine grape | cytosol | 50.94 | 20.0 |
| VIT_05s0020g01930.t01 | Wine grape | cytosol | 41.51 | 18.86 |
| CDY27467 | Canola | cytosol | 45.28 | 18.14 |
| KRH71532 | Soybean | cytosol | 45.28 | 18.0 |
| AT2G47900.3 | Thale cress | cytosol | 45.91 | 17.94 |
| Bra021446.1-P | Field mustard | cytosol | 45.28 | 17.91 |
| KXG39376 | Sorghum | cytosol, plastid | 44.65 | 17.79 |
| Zm00001d029165_P004 | Maize | cytosol, plastid | 44.65 | 17.71 |
| CDY55525 | Canola | cytosol | 44.65 | 17.66 |
| PGSC0003DMT400029513 | Potato | cytosol | 42.77 | 17.17 |
| TraesCS4A01G140800.1 | Wheat | cytosol, plastid | 42.77 | 16.92 |
| TraesCS4B01G166400.1 | Wheat | cytosol, plastid | 42.77 | 16.83 |
| TraesCS4D01G164200.1 | Wheat | cytosol, plastid | 42.77 | 16.83 |
| Solyc09g074510.2.1 | Tomato | cytosol | 41.51 | 16.67 |
| GSMUA_Achr3P17440_001 | Banana | cytosol | 42.14 | 16.63 |
| TraesCS2D01G122900.1 | Wheat | cytosol | 37.74 | 16.04 |
| GSMUA_Achr1P11290_001 | Banana | cytosol | 40.88 | 16.01 |
| TraesCS2A01G120900.1 | Wheat | mitochondrion | 37.74 | 15.96 |
| TraesCS2B01G141800.1 | Wheat | cytosol | 37.74 | 15.87 |
| Os07t0667000-01 | Rice | cytosol | 38.99 | 15.27 |
| EER97690 | Sorghum | cytosol | 36.48 | 14.54 |
| VIT_19s0014g01250.t01 | Wine grape | mitochondrion | 36.48 | 14.46 |
| VIT_12s0055g00460.t01 | Wine grape | mitochondrion | 38.36 | 14.39 |
| VIT_04s0023g01950.t01 | Wine grape | cytosol | 37.11 | 14.29 |
| VIT_12s0028g00190.t01 | Wine grape | cytosol, extracellular, mitochondrion, plastid | 5.03 | 13.56 |
| VIT_18s0072g00630.t01 | Wine grape | cytosol | 35.85 | 13.41 |
| VIT_01s0010g01060.t01 | Wine grape | mitochondrion | 4.4 | 12.96 |
| VIT_18s0001g12660.t01 | Wine grape | cytosol | 33.33 | 12.74 |
| Zm00001d007106_P001 | Maize | cytosol | 23.9 | 12.18 |
| Zm00001d029092_P001 | Maize | mitochondrion | 16.98 | 7.8 |
| Zm00001d047019_P001 | Maize | mitochondrion | 16.98 | 7.8 |
| VIT_09s0018g01630.t01 | Wine grape | cytosol | 17.61 | 7.43 |
| Zm00001d039784_P001 | Maize | mitochondrion, nucleus, peroxisome, plastid | 5.03 | 2.92 |
Protein Annotations
| MapMan:15.5.21 | Gene3D:3.20.90.10 | ProteinID:CBI33065 | ProteinID:CBI33065.3 | UniProt:D7TRE2 | EMBL:FN596019 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005929 | GO:GO:0008150 |
| GO:GO:0008289 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0035091 | GO:GO:0061512 | InterPro:IPR025659 |
| PFAM:PF01167 | PANTHER:PTHR16517 | PANTHER:PTHR16517:SF73 | SUPFAM:SSF54518 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| InterPro:Tubby-like_C | InterPro:Tubby_C | UniParc:UPI0001BE3C78 | ArrayExpress:VIT_00s0426g00050 | EnsemblPlantsGene:VIT_00s0426g00050 | EnsemblPlants:VIT_00s0426g00050.t01 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:-:28708587..28710607
Molecular Weight (calculated)
18659.0 Da
IEP (calculated)
8.782
GRAVY (calculated)
0.533
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLVWILIIF NTFAHPFISS YMKINFSPQP GPRGSLIQCY IKWNRTNQTY HLYFGLIQAS TDDGKFLLAA WNCRCPTFTD DIISLNAGDV WKGSTTYIGK
101: LRYVYMLYEV AHGIYCFTFF FFFFLFLIVL IPFCSSTLFA ERLITFACVE RIFFLGRFK
101: LRYVYMLYEV AHGIYCFTFF FFFFLFLIVL IPFCSSTLFA ERLITFACVE RIFFLGRFK
001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAASNDD GKFLLAAKRF RRPTCTDYII SLNCDDVSRG SNTYIGKLRS NFLGTKFTVY
201: DAQPTNPGTQ VTRTRSSRLL SLKQVSPRIP SGNYPVAHIS YELNVLGSRG PRRMQCVMDA IPASAVEPGG TAPTQTELVH SNLDSFPSFS FFRSKSIRAE
301: SLPSGPSSAA QKEGLLVLKN KAPRWHEQLQ CWCLNFNGRV TVASVKNFQL VAAPENGPAG PEHENVILQF GKVGKDVFTM DYQYPISAFQ AFTICLSSFD
401: TKIACE
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAASNDD GKFLLAAKRF RRPTCTDYII SLNCDDVSRG SNTYIGKLRS NFLGTKFTVY
201: DAQPTNPGTQ VTRTRSSRLL SLKQVSPRIP SGNYPVAHIS YELNVLGSRG PRRMQCVMDA IPASAVEPGG TAPTQTELVH SNLDSFPSFS FFRSKSIRAE
301: SLPSGPSSAA QKEGLLVLKN KAPRWHEQLQ CWCLNFNGRV TVASVKNFQL VAAPENGPAG PEHENVILQF GKVGKDVFTM DYQYPISAFQ AFTICLSSFD
401: TKIACE
Arabidopsis Description
AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.