Factsheet for TraesCS2B01G141800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G122900.1	Wheat	cytosol	97.35	98.4
TraesCS2A01G120900.1	Wheat	mitochondrion	96.83	97.34
Os07t0667000-01	Rice	cytosol	74.07	68.97
VIT_01s0010g01060.t01	Wine grape	mitochondrion	9.79	68.52
EER97690	Sorghum	cytosol	68.78	65.16
TraesCS4B01G166400.1	Wheat	cytosol, plastid	69.31	64.85
GSMUA_Achr1P11290_001	Banana	cytosol	64.55	60.1
GSMUA_Achr3P17440_001	Banana	cytosol	62.43	58.56
PGSC0003DMT400029513	Potato	cytosol	61.11	58.33
VIT_07s0104g01290.t01	Wine grape	cytosol	62.43	58.27
Solyc09g074510.2.1	Tomato	cytosol	60.58	57.83
KRH71532	Soybean	cytosol	59.52	56.25
CDY27467	Canola	cytosol	58.99	56.17
AT2G47900.3	Thale cress	cytosol	60.05	55.77
CDY55525	Canola	cytosol	58.99	55.47
Bra021446.1-P	Field mustard	cytosol	58.99	55.47
Zm00001d007106_P001	Maize	cytosol	45.5	55.13
TraesCS3B01G304600.1	Wheat	cytosol	46.03	49.57
TraesCS6B01G300200.1	Wheat	cytosol	52.65	46.71
TraesCS1B01G347200.1	Wheat	mitochondrion	45.24	45.84
TraesCS5B01G123800.1	Wheat	golgi	53.17	45.79
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	53.17	45.68
TraesCS1B01G282900.1	Wheat	mitochondrion	54.76	45.59
VIT_01s0010g01050.t01	Wine grape	cytosol	15.61	43.7
TraesCS7B01G227000.1	Wheat	mitochondrion	52.65	43.45
TraesCS3B01G411000.1	Wheat	mitochondrion	51.32	43.11
TraesCS2B01G613800.1	Wheat	mitochondrion, nucleus	52.12	41.74
VIT_00s0426g00050.t01	Wine grape	extracellular	15.87	37.74
Zm00001d029092_P001	Maize	mitochondrion	23.81	26.01
Zm00001d047019_P001	Maize	mitochondrion	23.81	26.01
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	12.96	17.88
TraesCS6B01G177300.1	Wheat	plastid	18.25	17.6

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167
PRINTS:PR01573	ScanProsite:PS01200	PANTHER:PTHR16517	PANTHER:PTHR16517:SF36	SUPFAM:SSF54518	SUPFAM:SSF81383
EnsemblPlantsGene:TraesCS2B01G141800	EnsemblPlants:TraesCS2B01G141800.1	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	SEG:seg

Description

No Description!

Coordinates

chr2B:-:108232641..108235461

Molecular Weight (calculated)

42509.2 Da

IEP (calculated)

10.152

GRAVY (calculated)

-0.321

Length

378 amino acids

Sequence
(BLAST)

001: MSFRSMVREM KGEVDAIARR RPLPPSARGV RRVAAVASVA LPEEAARQGW CWAELPPELL REVLARVEAS EPRWPRRRDV VACAGVCRTW RGVVREIVRV
101: PEVSGRLTFP ISLKQPGPRD APIKCFIRRH RATQTYFLYI GLTDALADSG KFLLAARKYH RPTCTEYLIS LDKTDMSKGS QTCVGKLRSN FLRTKFTVYD
201: AHPPHAGPVV PKRWPAGDYP VIQINYEVNV LGSRGPRRMN CIMDSIPVSA IEQGGTAPTQ TAFPFFNPKS SRMDSSITPL SSQVESKLVL KNKSPRWHEH
301: LRCWCLNFHG RVTVASVKNF QLVASDESAP ANEENDDTTL QFGKIGKDLF TLDYRYPVSA FQAFAICLSS FDTKLARE

Best Arabidopsis Sequence Match ( AT5G18680.1 )
(BLAST)

001: MTLRSLILEM RSRPHRVVHD LAAAAAADST SVSSQDYRWS EIPEELLREI LIRVEAADGG GWPSRRSVVA CAGVCRGWRL LMNETVVVPE ISSKLTFPIS
101: LKQPGPRDSL VQCFIKRNRI TQSYHLYLGL TNSLTDDGKF LLAACKLKHT TCTDYIISLR SDDMSRRSQA YVGKVRSNFL GTKFTVFDGN LLPSTGAAKL
201: RKSRSYNPAK VSAKVPLGSY PVAHITYELN VLGSRGPRKM QCLMDTIPTS TMEPQGVASE PSEFPLLGTR STLSRSQSKP LRSSSSHLKE TPLVLSNKTP
301: RWHEQLRCWC LNFHGRVTVA SVKNFQLVAA GASCGSGTGM SPERQSERII LQFGKVGKDM FTMDYGYPIS AFQAFAICLS SFETRIACE

Arabidopsis Description

TULP11Uncharacterized protein At5g18680 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVQ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.