Factsheet for PGSC0003DMT400029513

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074510.2.1	Tomato	cytosol	98.74	98.74
VIT_01s0010g01060.t01	Wine grape	mitochondrion	11.36	83.33
VIT_07s0104g01290.t01	Wine grape	cytosol	83.08	81.23
AT2G47900.3	Thale cress	cytosol	76.77	74.69
Bra021446.1-P	Field mustard	cytosol	73.99	72.89
GSMUA_Achr1P11290_001	Banana	cytosol	74.49	72.66
CDY27467	Canola	cytosol	72.73	72.54
CDY55525	Canola	cytosol	73.48	72.39
KRH71532	Soybean	cytosol	72.98	72.25
GSMUA_Achr3P17440_001	Banana	cytosol	73.23	71.96
Os03t0351400-01	Rice	cytosol	53.54	71.62
KXG39376	Sorghum	cytosol, plastid	71.46	70.93
Zm00001d029165_P004	Maize	cytosol, plastid	71.72	70.82
TraesCS4D01G164200.1	Wheat	cytosol, plastid	70.96	69.55
TraesCS4B01G166400.1	Wheat	cytosol, plastid	70.96	69.55
TraesCS4A01G140800.1	Wheat	cytosol, plastid	70.45	69.4
PGSC0003DMT400027634	Potato	cytosol	65.4	66.75
Os07t0667000-01	Rice	cytosol	64.9	63.3
TraesCS2D01G122900.1	Wheat	cytosol	58.33	61.76
TraesCS2B01G141800.1	Wheat	cytosol	58.33	61.11
TraesCS2A01G120900.1	Wheat	mitochondrion	57.83	60.9
EER97690	Sorghum	cytosol	61.11	60.65
PGSC0003DMT400061933	Potato	cytosol	59.34	55.16
PGSC0003DMT400076537	Potato	cytosol	58.08	53.86
Zm00001d007106_P001	Maize	cytosol	42.42	53.85
PGSC0003DMT400002858	Potato	mitochondrion	57.32	53.29
PGSC0003DMT400009280	Potato	cytosol	54.29	52.83
PGSC0003DMT400058090	Potato	cytosol	53.54	52.22
PGSC0003DMT400016310	Potato	cytosol	52.78	52.12
PGSC0003DMT400040088	Potato	cytosol	53.03	51.22
VIT_01s0010g01050.t01	Wine grape	cytosol	16.41	48.15
PGSC0003DMT400018209	Potato	mitochondrion	46.21	47.41
VIT_00s0426g00050.t01	Wine grape	extracellular	17.17	42.77
Zm00001d029092_P001	Maize	mitochondrion	22.73	26.01
Zm00001d047019_P001	Maize	mitochondrion	22.73	26.01
PGSC0003DMT400036862	Potato	nucleus	21.46	20.43
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	11.87	17.15

Protein Annotations

EntrezGene:102583347	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0005886	GO:GO:0006950	GO:GO:0008150	GO:GO:0009536	GO:GO:0009605
GO:GO:0009607	GO:GO:0009620	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0016020
GO:GO:0042542	GO:GO:0071470	InterPro:IPR001810	InterPro:IPR025659	UniProt:M1ASY0	PFAM:PF00646
PFAM:PF01167	EnsemblPlantsGene:PGSC0003DMG400011352	PGSC:PGSC0003DMG400011352	EnsemblPlants:PGSC0003DMT400029513	PRINTS:PR01573	ScanProsite:PS01201
PANTHER:PTHR16517	PANTHER:PTHR16517:SF36	SUPFAM:SSF54518	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
UniParc:UPI000294EB53	RefSeq:XP_006359433.1	:	:	:	:

Description

TLP domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400011352]

Coordinates

chr9:+:51959041..51964888

Molecular Weight (calculated)

44470.4 Da

IEP (calculated)

9.381

GRAVY (calculated)

-0.312

Length

396 amino acids

Sequence
(BLAST)

001: MSFKSMIQDM KDEFGSISRK GFRSRSHRVV QDCTVTLDAL RQSCWANMPP ELLRDVLMRI EESDSDWRPR KNVVACAGVC RSWREIMKEI VKTPEVSGKL
101: TFPISLKQPG PRDKLVQCFI RRNRSSQTYY LFLNLNEVAN DDGKFLLAAR KCKRPTYTDY IISLNAEDVS KGSSTYIGKL RSNFLGTKFT VYDAQPSNAG
201: AKVSKCRSTR FVGMKQVSPR IPTGNYPVAH ISYELNVLGA RGPRRMLCIM DAIPASSIEP GGLAPTQTEF VPVNVDSFPS LHFFRSKSTR VDNFSSGPLP
301: SPKDEVLTLK NKAPRWHEQL QCWCLNFNGR VTVASVKNFQ LVASLGDGAG QENENVILQF GKVGEDLFTM DYQYPISAFQ AFAICLSSFD TKIACE

Best Arabidopsis Sequence Match ( AT2G47900.1 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAASNDD GKFLLAAKRF RRPTCTDYII SLNCDDVSRG SNTYIGKLRS NFLGTKFTVY
201: DAQPTNPGTQ VTRTRSSRLL SLKQVSPRIP SGNYPVAHIS YELNVLGSRG PRRMQCVMDA IPASAVEPGG TAPTQTELVH SNLDSFPSFS FFRSKSIRAE
301: SLPSGPSSAA QKEGLLVLKN KAPRWHEQLQ CWCLNFNGRV TVASVKNFQL VAAPENGPAG PEHENVILQF GKVGKDVFTM DYQYPISAFQ AFTICLSSFD
401: TKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.