Factsheet for Os03t0351400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g01060.t01	Wine grape	mitochondrion	14.53	79.63
KXG39376	Sorghum	cytosol, plastid	90.88	67.42
TraesCS4B01G166400.1	Wheat	cytosol, plastid	90.88	66.58
TraesCS4A01G140800.1	Wheat	cytosol, plastid	90.2	66.42
TraesCS4D01G164200.1	Wheat	cytosol, plastid	90.2	66.09
Zm00001d029165_P004	Maize	cytosol, plastid	89.53	66.08
Os07t0667000-01	Rice	cytosol	78.04	56.9
GSMUA_Achr1P11290_001	Banana	cytosol	76.01	55.42
GSMUA_Achr3P17440_001	Banana	cytosol	73.99	54.34
VIT_07s0104g01290.t01	Wine grape	cytosol	73.99	54.07
PGSC0003DMT400029513	Potato	cytosol	71.62	53.54
Solyc09g074510.2.1	Tomato	cytosol	70.61	52.78
CDY27467	Canola	cytosol	69.93	52.14
KRH71532	Soybean	cytosol	70.27	52.0
AT2G47900.3	Thale cress	cytosol	71.28	51.84
Bra021446.1-P	Field mustard	cytosol	69.93	51.49
CDY55525	Canola	cytosol	69.26	50.99
VIT_01s0010g01050.t01	Wine grape	cytosol	18.92	41.48
Os02t0705300-01	Rice	cytosol	59.46	41.12
Os01t0674500-01	Rice	cytosol	48.99	40.73
Os05t0437900-01	Rice	mitochondrion	61.15	40.67
Os05t0514300-01	Rice	mitochondrion	50.68	40.32
VIT_00s0426g00050.t01	Wine grape	extracellular	21.62	40.25
Os05t0560400-00	Rice	cytosol	47.3	39.77
Os01t0866800-01	Rice	mitochondrion	59.46	39.29
Os12t0163400-01	Rice	cytosol	58.11	38.65
Os03t0348500-00	Rice	extracellular	21.96	38.46
Os04t0687900-01	Rice	cytosol	59.12	37.88
Os08t0103300-01	Rice	mitochondrion	57.43	37.69
Os01t0759100-01	Rice	cytosol, plastid	43.58	35.05
Os11t0163600-01	Rice	cytosol, mitochondrion	7.09	12.5
Os02t0179400-00	Rice	nucleus	10.47	7.51

Protein Annotations

EnsemblPlants:Os03t0351400-01	EnsemblPlantsGene:Os03g0351400	Gene3D:3.20.90.10	InterPro:IPR025659	InterPro:Tubby-like_C	InterPro:Tubby_C
InterPro:Tubby_C_CS	PANTHER:PTHR16517	PANTHER:PTHR16517:SF36	PFAM:PF01167	PRINTS:PR01573	ProteinID:BAS84199.1
ScanProsite:PS01200	SEG:seg	SUPFAM:SSF54518	UniParc:UPI0000E12084	UniProt:A0A0P0VYB9	MapMan:15.5.21

Description

tubby-like protein 14, tubby-like protein 6, F-box protein 139Similar to Tubby-like protein 3. (Os03t0351400-01)

Coordinates

chr3:-:13164567..13167540

Molecular Weight (calculated)

33056.4 Da

IEP (calculated)

9.560

GRAVY (calculated)

-0.387

Length

296 amino acids

Sequence
(BLAST)

001: YSSLRDVQPG PRDGTLKCFI RRNRTTQTYY LYIGLTEALA DDGKFLLAAR KCRKPTCTDY LISLDMSDMS KGSNTYIGKL RSNFLGTKFT VYDAHPPYDG
101: AVVSKSRSAR VVGLNQVSPR VPAGNYPVSH ISYELNVLGA RGPRRMNCIM DSIPTSAVQE GGKAPTQTEF PLSGLDSFPS ISFFRSKSAR IDSATSQLST
201: QKEEKLVLKN KSPRWHEQLQ CWCLNFRGRV TVASVKNFQL VASDENGPTN QEQDKVILQF GKIGKDLFTM DYRYPISAFQ SFAICLSSFD TKIACE

Best Arabidopsis Sequence Match ( AT2G47900.3 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAAASND DGKFLLAAKR FRRPTCTDYI ISLNCDDVSR GSNTYIGKLR SNFLGTKFTV
201: YDAQPTNPGT QVTRTRSSRL LSLKQVSPRI PSGNYPVAHI SYELNVLGSR GPRRMQCVMD AIPASAVEPG GTAPTQTELV HSNLDSFPSF SFFRSKSIRA
301: ESLPSGPSSA AQKEGLLVLK NKAPRWHEQL QCWCLNFNGR VTVASVKNFQ LVAAPENGPA GPEHENVILQ FGKVGKDVFT MDYQYPISAF QAFTICLSSF
401: DTKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.