Factsheet for Bra021446.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55525	Canola	cytosol	99.25	99.25
AT2G47900.3	Thale cress	cytosol	90.8	89.68
VIT_01s0010g01060.t01	Wine grape	mitochondrion	11.69	87.04
VIT_07s0104g01290.t01	Wine grape	cytosol	81.09	80.49
KRH71532	Soybean	cytosol	74.38	74.75
PGSC0003DMT400029513	Potato	cytosol	72.89	73.99
Solyc09g074510.2.1	Tomato	cytosol	72.89	73.99
GSMUA_Achr1P11290_001	Banana	cytosol	71.89	71.18
Os03t0351400-01	Rice	cytosol	51.49	69.93
GSMUA_Achr3P17440_001	Banana	cytosol	69.9	69.73
KXG39376	Sorghum	cytosol, plastid	68.66	69.17
Zm00001d029165_P004	Maize	cytosol, plastid	68.91	69.08
TraesCS4D01G164200.1	Wheat	cytosol, plastid	68.41	68.07
TraesCS4A01G140800.1	Wheat	cytosol, plastid	67.91	67.91
TraesCS4B01G166400.1	Wheat	cytosol, plastid	68.16	67.82
Bra020754.1-P	Field mustard	cytosol	52.99	61.92
Os07t0667000-01	Rice	cytosol	61.94	61.33
TraesCS2D01G122900.1	Wheat	cytosol	55.22	59.36
TraesCS2A01G120900.1	Wheat	mitochondrion	55.22	59.04
TraesCS2B01G141800.1	Wheat	cytosol	55.47	58.99
EER97690	Sorghum	cytosol	58.21	58.65
Bra002179.1-P	Field mustard	mitochondrion	56.72	57.14
Zm00001d007106_P001	Maize	cytosol	42.29	54.49
Bra039620.1-P	Field mustard	cytosol	50.0	53.17
Bra024763.1-P	Field mustard	cytosol	56.97	52.28
Bra010985.1-P	Field mustard	cytosol	56.97	52.16
VIT_01s0010g01050.t01	Wine grape	cytosol	17.41	51.85
Bra012486.1-P	Field mustard	cytosol	56.47	51.24
Bra040862.1-P	Field mustard	mitochondrion, nucleus	50.0	50.76
Bra015624.1-P	Field mustard	cytosol, mitochondrion	50.0	49.88
Bra040803.1-P	Field mustard	cytosol	54.73	49.22
Bra041095.1-P	Field mustard	cytosol, mitochondrion	45.27	48.28
Bra030942.1-P	Field mustard	mitochondrion	46.02	47.19
Bra015711.1-P	Field mustard	cytosol, mitochondrion	53.48	46.24
VIT_00s0426g00050.t01	Wine grape	extracellular	17.91	45.28
Zm00001d029092_P001	Maize	mitochondrion	23.13	26.88
Zm00001d047019_P001	Maize	mitochondrion	23.13	26.88
Bra026081.1-P	Field mustard	nucleus	19.9	20.57
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	12.94	18.98

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	EnsemblPlantsGene:Bra021446	EnsemblPlants:Bra021446.1	EnsemblPlants:Bra021446.1-P	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006950	GO:GO:0008150
GO:GO:0009536	GO:GO:0009605	GO:GO:0009607	GO:GO:0009620	GO:GO:0009628	GO:GO:0009651
GO:GO:0009987	GO:GO:0016020	GO:GO:0042542	GO:GO:0071470	InterPro:IPR001810	InterPro:IPR025659
UniProt:M4DY50	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	PANTHER:PTHR16517	PANTHER:PTHR16517:SF36
SUPFAM:SSF54518	InterPro:Tubby-like_C	InterPro:Tubby_C	UniParc:UPI0002544920	SEG:seg	:

Description

AT2G47900 (E=1e-200) AtTLP3 | AtTLP3 (TUBBY LIKE PROTEIN 3); phosphoric diester hydrolase/ transcription factor

Coordinates

chrA01:+:25190860..25192293

Molecular Weight (calculated)

44688.7 Da

IEP (calculated)

10.036

GRAVY (calculated)

-0.257

Length

402 amino acids

Sequence
(BLAST)

001: MSFKSLIQEM RGELGSISRK GFGFGRSRSQ RVVQDSCVVP VDAFKQSCWA TMPPELLRDV LVRIEASEDT WPSRKNVVAC AGVCRNWRAL VKEIVKVPQL
101: SSKLTFPISL KQPGPRASSS LLQCYIIRNR TNQTYHLYLA LNQASASNDD GKFLLAAKRF RRPTCTDYII SLNSDDVSRG SSSYIGKLRS NFLGTKFTVY
201: DAQPTNPGAQ VTRTRSTRLL SLKQVSPRVP SGNYPVSHIS YELNVLGSRG PRRMQCVMDA IPASAVEPAG TAPTQTELVH SNLDMFPSFS FFRSKSVRSE
301: SLPQPAQKDG LLVLKNKAPR WHEQLQCWCL NFNGRVTVAS VKNFQLVAAP ENGPAGPEHE NVILQFGKVG KDVFTMDFQY PISAFQAFTI CLSSFDTKIA
401: CE

Best Arabidopsis Sequence Match ( AT2G47900.3 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAAASND DGKFLLAAKR FRRPTCTDYI ISLNCDDVSR GSNTYIGKLR SNFLGTKFTV
201: YDAQPTNPGT QVTRTRSSRL LSLKQVSPRI PSGNYPVAHI SYELNVLGSR GPRRMQCVMD AIPASAVEPG GTAPTQTELV HSNLDSFPSF SFFRSKSIRA
301: ESLPSGPSSA AQKEGLLVLK NKAPRWHEQL QCWCLNFNGR VTVASVKNFQ LVAAPENGPA GPEHENVILQ FGKVGKDVFT MDYQYPISAF QAFTICLSSF
401: DTKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.