Factsheet for Bra040803.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76900.1	Bra003735.1-P	AT1G75950.1	25168737
AT1G76900.1	Bra008231.1-P	AT1G75950.1	25168737
AT1G76900.1	Bra015801.1-P	AT1G75950.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45959	Canola	cytosol	95.75	99.77
CDY13570	Canola	cytosol	93.29	98.12
AT1G76900.1	Thale cress	cytosol	91.05	89.45
Bra015711.1-P	Field mustard	cytosol, mitochondrion	91.5	87.96
HORVU5Hr1G023650.1	Barley	plastid	41.39	76.76
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	68.9	71.96
Bra024763.1-P	Field mustard	cytosol	67.56	68.95
Bra010985.1-P	Field mustard	cytosol	67.56	68.79
Bra012486.1-P	Field mustard	cytosol	68.01	68.62
TraesCS4D01G110100.1	Wheat	golgi	66.67	67.73
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	66.44	67.5
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	66.44	67.5
Os12t0163400-01	Rice	cytosol	66.67	66.97
KXG23034	Sorghum	cytosol, mitochondrion	65.32	66.82
TraesCS5A01G124100.1	Wheat	cytosol	64.65	65.83
TraesCS5B01G123800.1	Wheat	golgi	64.43	65.6
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	64.43	65.6
Zm00001d053179_P001	Maize	cytosol	63.98	63.84
EES08030	Sorghum	cytosol, mitochondrion	63.76	62.5
GSMUA_Achr11P...	Banana	cytosol	54.36	58.55
Bra039620.1-P	Field mustard	cytosol	47.2	55.82
Bra021446.1-P	Field mustard	cytosol	49.22	54.73
Bra020754.1-P	Field mustard	cytosol	41.61	54.07
Bra015624.1-P	Field mustard	cytosol, mitochondrion	48.32	53.6
Bra040862.1-P	Field mustard	mitochondrion, nucleus	46.31	52.27
Bra041095.1-P	Field mustard	cytosol, mitochondrion	41.61	49.34
Bra030942.1-P	Field mustard	mitochondrion	41.61	47.45
Bra002179.1-P	Field mustard	mitochondrion	41.83	46.87
Bra026081.1-P	Field mustard	nucleus	18.34	21.08

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	EnsemblPlantsGene:Bra040803	EnsemblPlants:Bra040803.1	EnsemblPlants:Bra040803.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659
UniProt:M4FI74	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201
PANTHER:PTHR16517	PANTHER:PTHR16517:SF45	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C
InterPro:Tubby_C_CS	UniParc:UPI000253E8FA	SEG:seg	:	:	:

Description

AT1G76900 (E=1e-211) AtTLP1 | AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor

Coordinates

chrScaffold000262:+:12009..13703

Molecular Weight (calculated)

50545.6 Da

IEP (calculated)

9.968

GRAVY (calculated)

-0.449

Length

447 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDSIGSLSRR RFDFKLSSLH REGGKSRGSV QDCHEEQQVQ QQPLVLVQET PWANLPPELL HDVIKRLEES ESAWPARRHV VACASVCRSW
101: RDMCKEIVQR PELSGKITFP VSLKQPGPRD ATMQCFIKRD KSNLTYHLYL CLSPALLVEN GKFLLSAKRI RRSTYTEYVI SMHADTISRS SNTYIGKIRS
201: NFLGTKFIIY DTQPPYNKPS QALQPLGLSR RFYSKRVSPK VPSGSYKIAQ VSYELNVLGT RGPRRMHCAM HSIPASSLAE GGTVPGQPQI IVPRSLLDES
301: FRSITSSSSR KFTSDYSTEF NSARFSDILE EGEAVFGEGK ERVSPPLVLK NKPPRWHEQL QCWCLNFRGR VTVASVKNFQ LIAANQPQPQ PQPQPQTSGQ
401: TDGPDKIILQ FGKVGKDMFT MDFRYPLSAF QAFAICLSSF DTKLACE

Best Arabidopsis Sequence Match ( AT1G76900.2 )
(BLAST)

001: MSFRSIVRDV RDSIGSLSRR SFDFKLSSLN KEGGKSRGSV QDSHEEQLVV TIQETPWANL PPELLRDVIK RLEESESVWP ARRHVVACAS VCRSWRDMCK
101: EIVQSPELSG KITFPVSLKQ PGPRDATMQC FIKRDKSNLT YHLYLCLSPA LLVENGKFLL SAKRIRRTTY TEYVISMHAD TISRSSNTYI GKIRSNFLGT
201: KFIIYDTQPA YNSNIARAVQ PVGLSRRFYS KRVSPKVPSG SYKIAQVSYE LNVLGTRGPR RMHCAMNSIP ASSLAEGGTV PGQPDIIVPR SILDESFRSI
301: TSSSSRKITY DYSNDFSSAR FSDILGPLSE DQEVVLEEGK ERNSPPLVLK NKPPRWHEQL QCWCLNFRGR VTVASVKNFQ LIAANQPQPQ PQPQPQPQPL
401: TQPQPSGQTD GPDKIILQFG KVGKDMFTMD FRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP1Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WI43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.