Factsheet for TraesCS5D01G132000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G124100.1	Wheat	cytosol	98.86	98.86
TraesCS5B01G123800.1	Wheat	golgi	98.41	98.41
HORVU5Hr1G040000.2	Barley	cytosol	94.08	94.08
Os12t0163400-01	Rice	cytosol	87.02	85.84
KXG23034	Sorghum	cytosol, mitochondrion	83.83	84.21
TraesCS4D01G110100.1	Wheat	golgi	78.36	78.18
VIT_18s0072g00630.t01	Wine grape	cytosol	71.98	74.35
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	71.53	73.36
KRH10476	Soybean	cytosol, mitochondrion	70.84	72.83
Solyc04g071440.2.1	Tomato	mitochondrion	70.61	72.77
VIT_12s0055g00460.t01	Wine grape	mitochondrion	70.16	72.64
PGSC0003DMT400061933	Potato	cytosol	70.39	72.54
KRH43964	Soybean	cytosol, mitochondrion	70.39	72.37
KRH70303	Soybean	cytosol	69.25	71.7
KRH08694	Soybean	mitochondrion	69.25	71.7
PGSC0003DMT400076537	Potato	cytosol	69.7	71.66
Solyc01g104670.2.1	Tomato	cytosol	69.48	71.43
KRG91652	Soybean	cytosol, mitochondrion	69.7	71.16
KRH35144	Soybean	cytosol, mitochondrion	69.7	71.16
Solyc10g046970.1.1	Tomato	mitochondrion	68.34	70.42
PGSC0003DMT400002858	Potato	mitochondrion	67.65	69.72
TraesCS1D01G273200.1	Wheat	mitochondrion	70.84	68.5
TraesCS3D01G371600.1	Wheat	mitochondrion	68.34	66.82
CDY45959	Canola	cytosol	64.69	66.2
CDY13570	Canola	cytosol	63.78	65.88
CDX84977	Canola	cytosol	62.87	65.71
CDY36119	Canola	cytosol	62.41	64.93
Bra024763.1-P	Field mustard	cytosol	64.46	64.61
Bra040803.1-P	Field mustard	cytosol	65.6	64.43
CDY42119	Canola	cytosol	64.01	64.3
AT1G25280.1	Thale cress	cytosol	65.15	64.27
CDY51990	Canola	cytosol	61.73	64.07
Bra010985.1-P	Field mustard	cytosol	63.78	63.78
CDY66464	Canola	cytosol	61.96	63.4
CDY72036	Canola	cytosol	63.78	63.21
Bra012486.1-P	Field mustard	cytosol	63.78	63.21
AT1G76900.1	Thale cress	cytosol	65.38	63.08
TraesCS7D01G323100.1	Wheat	mitochondrion	64.01	61.35
CDY65845	Canola	cytosol, mitochondrion	62.87	61.33
CDX87562	Canola	cytosol, mitochondrion	62.64	60.98
AT1G43640.1	Thale cress	cytosol	59.23	60.61
Bra015711.1-P	Field mustard	cytosol, mitochondrion	63.78	60.22
TraesCS2D01G584900.1	Wheat	cytosol, mitochondrion	61.28	57.36
GSMUA_Achr11P...	Banana	cytosol	53.99	57.11
TraesCS2D01G122900.1	Wheat	cytosol	46.01	54.01
TraesCS6D01G252800.1	Wheat	cytosol	52.16	53.88
TraesCS4D01G164200.1	Wheat	cytosol, plastid	49.2	53.47
TraesCS3D01G270500.1	Wheat	cytosol	39.86	49.3
TraesCS1D01G336400.1	Wheat	mitochondrion	40.09	46.81
TraesCS6D01G138700.1	Wheat	plastid	17.31	19.49

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167
PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF43	SUPFAM:SSF54518
SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS5D01G132000	EnsemblPlants:TraesCS5D01G132000.1	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:209642818..209645522

Molecular Weight (calculated)

48859.3 Da

IEP (calculated)

9.238

GRAVY (calculated)

-0.336

Length

439 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDGFGSLSRR GFDVRFLGHR RGKSHSAVHE LHDPAPVIQS SCWANLPPEL LHDVIERLEA SEATWPSRKH VVACAAVCRT WREMCQEIVK
101: NPEFCGKITF PVSLKQPGPR DGTIQCFIKR DKSTQTYYLH LCLTSAVVAE NGKFLLLAKR HSRPTCTEYT IFMNTDNTSR SSNMYIGKLR SNLLGTKFVI
201: YDTQHPCNIP NVSQSGKTSC RFYSRKVSPK ASSSTYSIAQ VSYELNVLGT RGPRRMNCVM NSIPASSLEA GGTVLCQPDS AVAHSLDESF GSISFLKSSI
301: RDRSIRFSST RFSGISIGGS RNGGQALGDN DECKEWPLTL RNKAPRWHDQ LQCWCLNFKG RVTVASVKNF QLVAATESTA EAPTPSQPAP PPPSEHDKVI
401: LQFGKVAKDM FTMDYRYPLS AFQAFAICLS SFDTKLACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.