Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G141400.1 | |
| TraesCS2B01G166400.1 | |
| TraesCS2D01G144900.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16070.1 | TraesCS2A01G141400.1 | AT2G04620.1 | 16792696 |
| AT1G16070.1 | TraesCS2B01G166400.1 | AT2G04620.1 | 16792696 |
| AT1G16070.1 | TraesCS2D01G144900.1 | AT2G04620.1 | 16792696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G149400.1 | Wheat | plastid | 97.18 | 94.75 |
| TraesCS6B01G177300.1 | Wheat | plastid | 89.23 | 88.78 |
| HORVU6Hr1G029710.3 | Barley | plastid | 87.95 | 86.84 |
| Zm00001d015485_P001 | Maize | plastid | 71.79 | 69.65 |
| KXG29622 | Sorghum | plastid | 74.87 | 68.87 |
| GSMUA_Achr1P10180_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 49.23 | 52.32 |
| Os02t0179400-00 | Rice | nucleus | 53.08 | 50.12 |
| VIT_09s0018g01630.t01 | Wine grape | cytosol | 46.92 | 48.54 |
| KRH23693 | Soybean | plastid | 40.26 | 44.1 |
| AT1G16070.1 | Thale cress | nucleus | 42.82 | 42.07 |
| Bra026081.1-P | Field mustard | nucleus | 41.79 | 41.9 |
| CDY35067 | Canola | nucleus | 41.79 | 41.9 |
| CDY69989 | Canola | nucleus | 42.05 | 41.84 |
| Solyc03g117730.2.1 | Tomato | cytosol | 43.33 | 41.63 |
| PGSC0003DMT400036862 | Potato | nucleus | 43.59 | 40.87 |
| TraesCS6D01G252800.1 | Wheat | cytosol | 20.0 | 18.35 |
| TraesCS5D01G132000.1 | Wheat | cytosol, mitochondrion | 19.49 | 17.31 |
| TraesCS1D01G336400.1 | Wheat | mitochondrion | 16.67 | 17.29 |
| TraesCS3D01G270500.1 | Wheat | cytosol | 15.38 | 16.9 |
| TraesCS7D01G323100.1 | Wheat | mitochondrion | 19.49 | 16.59 |
| TraesCS4D01G110100.1 | Wheat | golgi | 18.46 | 16.36 |
| TraesCS1D01G273200.1 | Wheat | mitochondrion | 18.46 | 15.86 |
| TraesCS4D01G164200.1 | Wheat | cytosol, plastid | 16.41 | 15.84 |
| TraesCS2D01G122900.1 | Wheat | cytosol | 14.87 | 15.51 |
| TraesCS3D01G371600.1 | Wheat | mitochondrion | 17.18 | 14.92 |
| TraesCS2D01G584900.1 | Wheat | cytosol, mitochondrion | 17.18 | 14.29 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G138700.1 | EnsemblPlantsGene:TraesCS6D01G138700 | Gene3D:3.20.90.10 | InterPro:IPR025659 | InterPro:Tubby-like_C | InterPro:Tubby_C |
| PANTHER:PTHR16517 | PANTHER:PTHR16517:SF27 | PFAM:PF01167 | PRINTS:PR01573 | SEG:seg | SUPFAM:SSF54518 |
| MapMan:15.5.21 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:107796236..107797969
Molecular Weight (calculated)
42845.5 Da
IEP (calculated)
10.688
GRAVY (calculated)
-0.508
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATPPKREP LAPLSCNAAA NTPAAATRPR APAVSAEKEN LGAANLGPGK EEKRATAPAA AKAAPLKPSS LQARMEGEEA AGLPVFVGPR GRELLPPAPP
101: APASSSYEAW DLSDNEAAPA ASWATLPNRA LLCRPLPLDV GRCTCVVVRE KATGARGVAL YSLYTNEGQG RQDRKLAVAR HRRRRGRSEF IVAQNQDGVF
201: CSSDKNFLGT MGANLVGSKY QIWGQGNRVD ELKSQSKRLL GVIAFAPTIT TLTGSFRSMR AWIPKNQSMQ LRTNSSAQIQ HVSGLPKDWQ EKRNRAEQLC
301: SRSPFYNNMT KRYELDFRER VGRMGYKVQT SVKNFQMTLE VKFLLQLSMG LDQTEQHIMI STTCARQENG RQTILQLGRV GKSKYIMDFR
101: APASSSYEAW DLSDNEAAPA ASWATLPNRA LLCRPLPLDV GRCTCVVVRE KATGARGVAL YSLYTNEGQG RQDRKLAVAR HRRRRGRSEF IVAQNQDGVF
201: CSSDKNFLGT MGANLVGSKY QIWGQGNRVD ELKSQSKRLL GVIAFAPTIT TLTGSFRSMR AWIPKNQSMQ LRTNSSAQIQ HVSGLPKDWQ EKRNRAEQLC
301: SRSPFYNNMT KRYELDFRER VGRMGYKVQT SVKNFQMTLE VKFLLQLSMG LDQTEQHIMI STTCARQENG RQTILQLGRV GKSKYIMDFR
001: MAGSRKVNDL LEENKGNVDT ITGSLSTQKG EDKENVSPEK VSTSVETRKL DRALKSQSMK GNSGFPTEVT NFKSFSTGGR TALKQSSLQA CMQKNSEVDK
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV
Arabidopsis Description
TULP8TLP8 [Source:UniProtKB/TrEMBL;Acc:A0A178WHW0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.