Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- golgi 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G149400.1 | |
| TraesCS6B01G177300.1 | |
| TraesCS6D01G138700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G04620.1 | TraesCS6A01G149400.1 | AT1G16070.1 | 16792696 |
| AT2G04620.1 | TraesCS6B01G177300.1 | AT1G16070.1 | 16792696 |
| AT2G04620.1 | TraesCS6D01G138700.1 | AT1G16070.1 | 16792696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G166400.1 | Wheat | plastid | 94.76 | 92.98 |
| HORVU2Hr1G025050.1 | Barley | endoplasmic reticulum, plasma membrane | 53.77 | 89.19 |
| TraesCS2A01G141400.1 | Wheat | plastid | 88.63 | 88.86 |
| Os08t0422200-00 | Rice | cytosol | 20.69 | 72.0 |
| EES15000 | Sorghum | plastid | 66.03 | 64.87 |
| Zm00001d050335_P001 | Maize | plastid | 63.22 | 62.9 |
| Zm00001d032262_P001 | Maize | plasma membrane, plastid | 61.81 | 61.27 |
| CDY30290 | Canola | plasma membrane, plastid | 41.51 | 42.93 |
| CDY30837 | Canola | plasma membrane, plastid | 41.63 | 42.39 |
| Bra025618.1-P | Field mustard | plasma membrane, plastid | 41.25 | 42.22 |
| AT2G04620.1 | Thale cress | plasma membrane | 41.76 | 40.98 |
| KRH42631 | Soybean | endoplasmic reticulum, nucleus, plasma membrane, plastid | 38.7 | 38.5 |
| PGSC0003DMT400017877 | Potato | plasma membrane | 41.25 | 36.17 |
| Solyc02g067620.1.1 | Tomato | nucleus | 41.51 | 36.03 |
| VIT_14s0066g02030.t01 | Wine grape | endoplasmic reticulum, golgi, nucleus | 38.31 | 27.22 |
| TraesCS4D01G323700.1 | Wheat | golgi, peroxisome, plasma membrane | 13.03 | 25.12 |
| TraesCS1D01G074400.1 | Wheat | peroxisome | 13.41 | 24.94 |
Protein Annotations
| Gene3D:1.20.1510.10 | MapMan:24.2.9.2.3 | InterPro:Cation_efflux | InterPro:Cation_efflux_CTD_sf | InterPro:Cation_efflux_TMD_sf | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006812 | GO:GO:0008150 | GO:GO:0008324 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR027469 | InterPro:IPR036837 | PFAM:PF01545 |
| PANTHER:PTHR11562 | PANTHER:PTHR11562:SF13 | SUPFAM:SSF160240 | SUPFAM:SSF161111 | TIGRFAMs:TIGR01297 | TMHMM:TMhelix |
| EnsemblPlantsGene:TraesCS2D01G144900 | EnsemblPlants:TraesCS2D01G144900.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2D:+:86491580..86497023
Molecular Weight (calculated)
84987.4 Da
IEP (calculated)
7.793
GRAVY (calculated)
0.144
Length
783 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPHRAFPD PPPMAAFRSG RHAAHLRLAV PPRLAAHPSF RFPTTPLPTP SKTRLPAAGA VSPYAAALLR ILALHSLFLL APAARALPSL PHLFLLPPLL
101: AIISAVAILL IPSKSQPHPF PALRHLFRPA LLLAASLLLR LASLHLITDT GLIVLADSAG ALLARALNRP SRRRVISVAA ASVSLAAASP SHPVLLLALP
201: FASGLLSSVE HSVSARHVTR SRHARAAVFA LAATFLSAPA LAGLFFLGGT DTSDGVPIGQ LWWLLLNAAV FGMALGRRQA YDSSSSSSRP SMNFAMTFVC
301: TIVLELVYYP KLSLPGFLVC GFILWIASRE LTPSGYVELG SADESVYEAV MGPVRHILSE RKSRKIAAFL LINTAYMFVE FASGFMSDSL GLLSDACHML
401: FDCAALAIGL YASYIARLPA NGLYNYGRGR FEVLSGYVNA VFLVLVGALI VLESFERILE PREISTSSLL AVSVGGLFVN IIGLVFFHEE HHHAHGGSCS
501: HSHSHSHSRS HDHGHEDHHH DHVHQSADHE KTCSGHHGDT NKSHHHNHRH DSNNAENHHQ HNHSCSHKHG HNGHMEHHRQ GVDQAHQDCS SINGEQGLLE
601: IPLINVHSHG AESQSCNGEL ELRETGNHAK PASRRHIDHN MEGIFLHVLA DTMGSAGVVI STLLIKYKGW LIADPICSVF ISIMIVASVL PLLRNSAEIL
701: LQRVPRSHEK DFEAALDDVK KINGVIGVHN VHLWNLTNTD IVGTFHLHIS AEADKSVIRE SASRIFQEAG VQDLTIQIEC VER
101: AIISAVAILL IPSKSQPHPF PALRHLFRPA LLLAASLLLR LASLHLITDT GLIVLADSAG ALLARALNRP SRRRVISVAA ASVSLAAASP SHPVLLLALP
201: FASGLLSSVE HSVSARHVTR SRHARAAVFA LAATFLSAPA LAGLFFLGGT DTSDGVPIGQ LWWLLLNAAV FGMALGRRQA YDSSSSSSRP SMNFAMTFVC
301: TIVLELVYYP KLSLPGFLVC GFILWIASRE LTPSGYVELG SADESVYEAV MGPVRHILSE RKSRKIAAFL LINTAYMFVE FASGFMSDSL GLLSDACHML
401: FDCAALAIGL YASYIARLPA NGLYNYGRGR FEVLSGYVNA VFLVLVGALI VLESFERILE PREISTSSLL AVSVGGLFVN IIGLVFFHEE HHHAHGGSCS
501: HSHSHSHSRS HDHGHEDHHH DHVHQSADHE KTCSGHHGDT NKSHHHNHRH DSNNAENHHQ HNHSCSHKHG HNGHMEHHRQ GVDQAHQDCS SINGEQGLLE
601: IPLINVHSHG AESQSCNGEL ELRETGNHAK PASRRHIDHN MEGIFLHVLA DTMGSAGVVI STLLIKYKGW LIADPICSVF ISIMIVASVL PLLRNSAEIL
701: LQRVPRSHEK DFEAALDDVK KINGVIGVHN VHLWNLTNTD IVGTFHLHIS AEADKSVIRE SASRIFQEAG VQDLTIQIEC VER
001: MVDHHHHHHH QHRPNRLSVP QPTIGRTYPS FPYTPTPTPS KTRLSSSSSY RSIHGSKSSL SFLFLILFSL RSLYSLLPFL RSSPSFSLFP FSFLVSLLSF
101: LFSLSFTIIS SFSPSKKDPF LLRLQNRSFS SISSLSSSQI KLLLAKSFLL AFVFLLRFQA LRYCGAAAMI LAELSGTVSA RVLFSDTGGI GVRSSKVRGF
201: CVLFAGLLLL SISWDRVDCF PFSSSVESWG FWIYPKENCL RIWPLLLPFL SGFLGCYEKV SVNWNEIKQL DQKRVRLLSL FLTTVLLFPL AIWSFFFSGS
301: GDDSVSFGNL GWPLANTVVF GVLLSENYND DKFSSSKKKD SEREFLVTFL CTIVLELFYF PELSLWGLLL CGLLLYIAVR ELESVYSDYQ EIGMESPESF
401: STMFMKPIRH ILSEKKSRKI ALFLLINTAY MVVEFVAGFM SNSLGLISDA CHMLFDCAAL AIGLYASYIS RLPANHQYNY GRGRFEVLSG YVNAVFLVLV
501: GALIVLESIE RILDPQEIST NSLLVVSVGG LLVNIVGLIF FHEEHHHAHG GSGCTHSHSH QSHSHKNEEH HQHSDSHKHE EHHQHSDSHK HEEHHEHDHH
601: HHSHSHKHEE CNHNHDHEHQ SHSHNHEECN HNHDHHSDHQ PEKSEKKEHR HIDHNMEGIF LHVLADTMGS VGVVISTLLI KYKGWLVADP ASSIFISILI
701: IASVIPLLRN SAEILLQRVP RAHRQDLKEA MRNILKTKGV CSIQRLHVWS FTNSDVVATL HLLVSADSDK TDTKLQVSRL LEDAGVKDWT LQVESVNS
101: LFSLSFTIIS SFSPSKKDPF LLRLQNRSFS SISSLSSSQI KLLLAKSFLL AFVFLLRFQA LRYCGAAAMI LAELSGTVSA RVLFSDTGGI GVRSSKVRGF
201: CVLFAGLLLL SISWDRVDCF PFSSSVESWG FWIYPKENCL RIWPLLLPFL SGFLGCYEKV SVNWNEIKQL DQKRVRLLSL FLTTVLLFPL AIWSFFFSGS
301: GDDSVSFGNL GWPLANTVVF GVLLSENYND DKFSSSKKKD SEREFLVTFL CTIVLELFYF PELSLWGLLL CGLLLYIAVR ELESVYSDYQ EIGMESPESF
401: STMFMKPIRH ILSEKKSRKI ALFLLINTAY MVVEFVAGFM SNSLGLISDA CHMLFDCAAL AIGLYASYIS RLPANHQYNY GRGRFEVLSG YVNAVFLVLV
501: GALIVLESIE RILDPQEIST NSLLVVSVGG LLVNIVGLIF FHEEHHHAHG GSGCTHSHSH QSHSHKNEEH HQHSDSHKHE EHHQHSDSHK HEEHHEHDHH
601: HHSHSHKHEE CNHNHDHEHQ SHSHNHEECN HNHDHHSDHQ PEKSEKKEHR HIDHNMEGIF LHVLADTMGS VGVVISTLLI KYKGWLVADP ASSIFISILI
701: IASVIPLLRN SAEILLQRVP RAHRQDLKEA MRNILKTKGV CSIQRLHVWS FTNSDVVATL HLLVSADSDK TDTKLQVSRL LEDAGVKDWT LQVESVNS
Arabidopsis Description
Metal tolerance protein 12 [Source:UniProtKB/TrEMBL;Acc:A0A0A8IL98]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.