Factsheet for Solyc02g067620.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
golgi 2
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g117730.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04620.1	Solyc03g117730.2.1	AT1G16070.1	16792696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017877	Potato	plasma membrane	95.23	96.19
CDY30837	Canola	plasma membrane, plastid	51.44	60.34
CDY30290	Canola	plasma membrane, plastid	50.33	59.97
Bra025618.1-P	Field mustard	plasma membrane, plastid	50.78	59.87
AT2G04620.1	Thale cress	plasma membrane	52.0	58.77
KRH42631	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	47.67	54.64
Os08t0422200-00	Rice	cytosol	13.08	52.44
TraesCS2A01G141400.1	Wheat	plastid	36.14	41.74
Zm00001d050335_P001	Maize	plastid	36.25	41.55
Zm00001d032262_P001	Maize	plasma membrane, plastid	36.36	41.52
TraesCS2D01G144900.1	Wheat	plastid	36.03	41.51
TraesCS2B01G166400.1	Wheat	plastid	36.7	41.48
EES15000	Sorghum	plastid	36.59	41.41
HORVU2Hr1G025050.1	Barley	endoplasmic reticulum, plasma membrane	21.51	41.1
VIT_14s0066g02030.t01	Wine grape	endoplasmic reticulum, golgi, nucleus	43.35	35.48
Solyc07g007060.1.1	Tomato	plasma membrane	9.42	22.61
Solyc06g076440.1.1	Tomato	plasma membrane	8.76	21.18

Protein Annotations

Gene3D:1.20.1510.10	MapMan:24.2.9.2.3	InterPro:Cation_efflux	InterPro:Cation_efflux_TMD_sf	GO:GO:0003674	GO:GO:0005215
GO:GO:0005385	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0009987	GO:GO:0010043
GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0055085	GO:GO:0061088	GO:GO:0071577
GO:GO:0098655	InterPro:IPR027469	UniProt:K4B794	PFAM:PF01545	PANTHER:PTHR11562	PANTHER:PTHR11562:SF13
SUPFAM:SSF161111	EnsemblPlantsGene:Solyc02g067620.1	EnsemblPlants:Solyc02g067620.1.1	TIGRFAMs:TIGR01297	TMHMM:TMhelix	UniParc:UPI0002767587
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:37751503..37754211

Molecular Weight (calculated)

101202.0 Da

IEP (calculated)

7.345

GRAVY (calculated)

-0.066

Length

902 amino acids

Sequence
(BLAST)

001: MADNQQHHRH HRPNRLSLPP RAAVPITTST PTTTRTPYPS FNYPPSTPTP TPSKHRVSYL PTKSSPAKTS SLPFLFLLLF SLRSFYSLLP FLQSSPSSFS
101: LFPFSFLVSL LSFLLTFSFS FSFFSSSSSS RDPFHQKNRY GFFSFTRSQY KPLLAKSFLL AIVFLLRFQA LRYCGAAAMI LAEISGNIAS RFISEGKSRD
201: LFDRNRIRSY EVCGFISMFI GLVLLSISWD KIECFPLSSV NVYELGFSLL PRYSCVRIWP MLLPFLSGFL GCYESSSMNW GSLREMGKKQ LRLVSLFFTT
301: VILFVPAVIS MFVFEAEGDS ISIHNLGWPL VNTVVFGVLL SENFTAEKPV SSKDLQKEYL VTYICTVILE LFYFPELSLW GLLICGLLLW VSVRNLDPVD
401: PNYLELGLET SDWFTTAVMK PLRHILGDRK SRKIALFLLI NTAYMVVEFA AGLMSNSLGL ISDACHMLFD CAALAIGLYA SYISRLPANG QFNYGRGRFE
501: VLSGYANAVL LVLVGALIVL ESFERILDPQ EVSTNSLLSV SIGGLLVNIV GLIFFHEEHH HAHGGSCSHS HSHSHSKSDT DCHSNEHHHD HHLHDHDHHV
601: HQTKTEFSTT SHSHSHSPST CHDHHIHHLH DDHDHGGHHI QQEQISIVHE CHESCSSHAG NGHNADYKNQ SKKEKEWNEN NTPHPHDHSH DHNHGHHHHG
701: DADQHCHGVT LSSSSIKVHN DSVASFRGPD CSHGHKHVTT DKGVTEKHHH QHRHIDHNME GIFLHVLADT LGSVGVVIST LLIKYKGWLV ADPACSIFIS
801: VLIISSVIPL LRNSAEILLQ RVPRAHEHDV KEAVNDVMKI KGLSGIQKLH VWSFTNTDVI GTLHLLVSSE TDKSSAKTQV SEIFRHAGVK DLTMQVECIQ
901: SS

Best Arabidopsis Sequence Match ( AT2G04620.1 )
(BLAST)

001: MVDHHHHHHH QHRPNRLSVP QPTIGRTYPS FPYTPTPTPS KTRLSSSSSY RSIHGSKSSL SFLFLILFSL RSLYSLLPFL RSSPSFSLFP FSFLVSLLSF
101: LFSLSFTIIS SFSPSKKDPF LLRLQNRSFS SISSLSSSQI KLLLAKSFLL AFVFLLRFQA LRYCGAAAMI LAELSGTVSA RVLFSDTGGI GVRSSKVRGF
201: CVLFAGLLLL SISWDRVDCF PFSSSVESWG FWIYPKENCL RIWPLLLPFL SGFLGCYEKV SVNWNEIKQL DQKRVRLLSL FLTTVLLFPL AIWSFFFSGS
301: GDDSVSFGNL GWPLANTVVF GVLLSENYND DKFSSSKKKD SEREFLVTFL CTIVLELFYF PELSLWGLLL CGLLLYIAVR ELESVYSDYQ EIGMESPESF
401: STMFMKPIRH ILSEKKSRKI ALFLLINTAY MVVEFVAGFM SNSLGLISDA CHMLFDCAAL AIGLYASYIS RLPANHQYNY GRGRFEVLSG YVNAVFLVLV
501: GALIVLESIE RILDPQEIST NSLLVVSVGG LLVNIVGLIF FHEEHHHAHG GSGCTHSHSH QSHSHKNEEH HQHSDSHKHE EHHQHSDSHK HEEHHEHDHH
601: HHSHSHKHEE CNHNHDHEHQ SHSHNHEECN HNHDHHSDHQ PEKSEKKEHR HIDHNMEGIF LHVLADTMGS VGVVISTLLI KYKGWLVADP ASSIFISILI
701: IASVIPLLRN SAEILLQRVP RAHRQDLKEA MRNILKTKGV CSIQRLHVWS FTNSDVVATL HLLVSADSDK TDTKLQVSRL LEDAGVKDWT LQVESVNS

Arabidopsis Description

Metal tolerance protein 12 [Source:UniProtKB/TrEMBL;Acc:A0A0A8IL98]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.