CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
golgi 2
vacuole 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	nucleus, vacuole
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG29622

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04620.1	KXG29622	AT1G16070.1	16792696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050335_P001	Maize	plastid	83.44	84.5
Zm00001d032262_P001	Maize	plasma membrane, plastid	80.55	81.27
Os08t0422200-00	Rice	cytosol	20.08	71.11
HORVU2Hr1G025050.1	Barley	endoplasmic reticulum, plasma membrane	40.9	69.07
TraesCS2D01G144900.1	Wheat	plastid	64.87	66.03
TraesCS2A01G141400.1	Wheat	plastid	63.86	65.17
TraesCS2B01G166400.1	Wheat	plastid	65.24	65.16
Bra025618.1-P	Field mustard	plasma membrane, plastid	40.53	42.22
CDY30837	Canola	plasma membrane, plastid	40.65	42.13
CDY30290	Canola	plasma membrane, plastid	39.9	42.01
AT2G04620.1	Thale cress	plasma membrane	40.9	40.85
KRH42631	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	38.39	38.88
PGSC0003DMT400017877	Potato	plasma membrane	41.66	37.18
Solyc02g067620.1.1	Tomato	nucleus	41.41	36.59
VIT_14s0066g02030.t01	Wine grape	endoplasmic reticulum, golgi, nucleus	39.15	28.31
OQU77333	Sorghum	peroxisome	12.55	23.81

Protein Annotations

Gene3D:1.20.1510.10	MapMan:24.2.9.2.3	EntrezGene:8075373	UniProt:C5YL05	InterPro:Cation_efflux	InterPro:Cation_efflux_TMD_sf
EnsemblPlants:EES15000	ProteinID:EES15000	ProteinID:EES15000.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005385
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810
GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0009987	GO:GO:0010043	GO:GO:0016020
GO:GO:0016021	GO:GO:0019725	GO:GO:0055085	GO:GO:0061088	GO:GO:0071577	GO:GO:0098655
InterPro:IPR027469	PFAM:PF01545	PANTHER:PTHR11562	PANTHER:PTHR11562:SF13	EnsemblPlantsGene:SORBI_3007G130500	SUPFAM:SSF161111
TIGRFAMs:TIGR01297	TMHMM:TMhelix	UniParc:UPI0001A87AA4	RefSeq:XP_002445505.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:54717177..54719839

Molecular Weight (calculated)

86398.8 Da

IEP (calculated)

7.560

GRAVY (calculated)

0.075

Length

797 amino acids

Sequence
(BLAST)

001: MSGRHAPQLR LAVPPRLSAH PSFRFPSTPL PTPSKARGLP YSSSASPSSS PYAAALLRLL VLHALFLLAP AVRALPSLAH ALALSPPLAL LSAAALLLLH
101: FAAASRKNHH QPHHPFPGIP ALLRPALLLA LSILLRLVAL RFLPSPGLLV LADSAGSLLA RALRRPSRRR VLSVAVAALS LVCISPSPSL ILAIPFASGF
201: LSSAEQSAAA RHATRTRRAR AAAFALAAAF ISVPALVGLS LFGGSDAGDA PDGAVSIGPL WWLLLNSAFF GMALGRRQEH GSGGGRPSVD FAMTFLCTLV
301: LELLYYPKLS LPGFLICGFL LWIASRELAP AGYVQLGTED VSESVFEAVM GPVRHILSER KSRKIAAFLL INTAYMFVEF GSGFMSDSLG LISDACHMLF
401: DCAALAIGLY ASYIARLPAN GMYNFGRGRF EILSGYVNAV FLVLVGSLIV LESFERILEP REISTSSLLA VSIGGLVVNI IGLVFFHEEH HHAHGGTCSH
501: SHSHSHSHHG HEHHQHHDHE DHKHHDHDHD HHGVNNVKGC CDHHGDDSHR HDHHGNSNSE GIHNNIMDNT CKEKHSHSHG HEHHHHEHSE HCHESRDHAH
601: QNCNSNSIEQ QLLDIPLSNI SSHDTEGHSS KAGLRPSDSG NRNKSGHRHH IDHNMEGIFL HVLADTMGSV GVVISTLLIK YKGWLIADPI CSVFISVMIV
701: SSVLPLLRNS AEILLQRVPR SHEKDLAVAL DDVMKIDGVL GVNNVHVWNL TNTDIVGTFH LHVSAEADKS SIRSKASQIF QEAGVQDLTI EIECVKR

Best Arabidopsis Sequence Match ( AT2G04620.1 )
(BLAST)

001: MVDHHHHHHH QHRPNRLSVP QPTIGRTYPS FPYTPTPTPS KTRLSSSSSY RSIHGSKSSL SFLFLILFSL RSLYSLLPFL RSSPSFSLFP FSFLVSLLSF
101: LFSLSFTIIS SFSPSKKDPF LLRLQNRSFS SISSLSSSQI KLLLAKSFLL AFVFLLRFQA LRYCGAAAMI LAELSGTVSA RVLFSDTGGI GVRSSKVRGF
201: CVLFAGLLLL SISWDRVDCF PFSSSVESWG FWIYPKENCL RIWPLLLPFL SGFLGCYEKV SVNWNEIKQL DQKRVRLLSL FLTTVLLFPL AIWSFFFSGS
301: GDDSVSFGNL GWPLANTVVF GVLLSENYND DKFSSSKKKD SEREFLVTFL CTIVLELFYF PELSLWGLLL CGLLLYIAVR ELESVYSDYQ EIGMESPESF
401: STMFMKPIRH ILSEKKSRKI ALFLLINTAY MVVEFVAGFM SNSLGLISDA CHMLFDCAAL AIGLYASYIS RLPANHQYNY GRGRFEVLSG YVNAVFLVLV
501: GALIVLESIE RILDPQEIST NSLLVVSVGG LLVNIVGLIF FHEEHHHAHG GSGCTHSHSH QSHSHKNEEH HQHSDSHKHE EHHQHSDSHK HEEHHEHDHH
601: HHSHSHKHEE CNHNHDHEHQ SHSHNHEECN HNHDHHSDHQ PEKSEKKEHR HIDHNMEGIF LHVLADTMGS VGVVISTLLI KYKGWLVADP ASSIFISILI
701: IASVIPLLRN SAEILLQRVP RAHRQDLKEA MRNILKTKGV CSIQRLHVWS FTNSDVVATL HLLVSADSDK TDTKLQVSRL LEDAGVKDWT LQVESVNS

Arabidopsis Description

Metal tolerance protein 12 [Source:UniProtKB/TrEMBL;Acc:A0A0A8IL98]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.