Factsheet for Zm00001d050335_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plastid

plastid: 20089766
plastid: 22065420

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d015485_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04620.1	Zm00001d015485_P001	AT1G16070.1	16792696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15000	Sorghum	plastid	84.5	83.44
Zm00001d032262_P001	Maize	plasma membrane, plastid	82.72	82.41
Os08t0422200-00	Rice	cytosol	19.7	68.89
HORVU2Hr1G025050.1	Barley	endoplasmic reticulum, plasma membrane	39.77	66.31
TraesCS2D01G144900.1	Wheat	plastid	62.9	63.22
TraesCS2B01G166400.1	Wheat	plastid	63.02	62.16
TraesCS2A01G141400.1	Wheat	plastid	61.25	61.72
Bra025618.1-P	Field mustard	plasma membrane, plastid	39.77	40.91
CDY30837	Canola	plasma membrane, plastid	39.77	40.7
CDY30290	Canola	plasma membrane, plastid	39.14	40.69
AT2G04620.1	Thale cress	plasma membrane	40.53	39.97
KRH42631	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	38.12	38.12
PGSC0003DMT400017877	Potato	plasma membrane	41.8	36.84
Solyc02g067620.1.1	Tomato	nucleus	41.55	36.25
VIT_14s0066g02030.t01	Wine grape	endoplasmic reticulum, golgi, nucleus	38.63	27.59
Zm00001d010954_P001	Maize	plasma membrane	12.07	23.81
Zm00001d035447_P001	Maize	golgi, peroxisome, plasma membrane	10.67	19.53

Protein Annotations

Gene3D:1.20.1510.10	EntrezGene:100381425	MapMan:24.2.9.2.3	ProteinID:AQK52357.1	EMBL:BT061227	UniProt:C0HFX1
InterPro:Cation_efflux	InterPro:Cation_efflux_TMD_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
GO:GO:0098655	InterPro:IPR027469	PFAM:PF01545	PANTHER:PTHR11562	PANTHER:PTHR11562:SF13	SUPFAM:SSF161111
TIGRFAMs:TIGR01297	TMHMM:TMhelix	UniParc:UPI0001948AE8	EnsemblPlantsGene:Zm00001d050335	EnsemblPlants:Zm00001d050335_P001	EnsemblPlants:Zm00001d050335_T001
SEG:seg	:	:	:	:	:

Description

Cation efflux family protein

Coordinates

chr4:-:81955812..81958175

Molecular Weight (calculated)

85705.2 Da

IEP (calculated)

7.602

GRAVY (calculated)

0.087

Length

787 amino acids

Sequence
(BLAST)

001: MSGRHAPHLR LAVPPRLSAH PSFRFPSTPL PTPSKARGLP SSAAPPSSRY ADGLLRLIVL HALFLLAPAV RALPSLAHAL AFSPPLALLS AAALLLHHFA
101: AASRKTHQPH RPFPGFPALV RPAFLLALSI LLRLVALRIL PAPGLLVLAD SAGSLLARAL RRPSRRRVIS TAVAALSLVC ISPSPSVILA IPFAAGFLSS
201: TEQSAAARHA TRTRLARAAA FALAAAFLSV PALVGLSFFG ASDAGDGPPD GAVPIGPVWW LLLNSAFFGM ALERRQEHGS GGGRPSVDFA LTFLCTLVLE
301: LLYYPKLSLP GFLICGFLLW IASRELIPAG YVEHGTEDIS ESVFEAIMGP VRHILSERKS RKIAVFLLIN TAYMFVEFGC GFVSDSLGLI SDACHMLFDC
401: AALAIGLYAS YIARLPANGM YNFGRGRFEV LSGYVNAVFL VLVGVLIVLE SFERILEPRE ISTSSLLSVS IGGLVVNIIG LVFFHEEHHH AHGGTCSHSH
501: SHSHHGHEHH QHHGHEEHKH HNHDHHGANN VKACCDHHGD DNHRHDHHGN SKSEGIHNNI MDNTCKEKHG HEHHHHEHSE HCHQSRDHSH QNCNNITVEQ
601: QLLDIPLSNI SSHDTESHSS KEGLRPSDSG NSNKPGHRHH IDHNMEGIFL HVLADTMGSV GVVISTLLIK YKGWLIADPI CSVFISVMIV SSVIPLLRNS
701: AEILLQRVPR NHEKDLAVAL DDVMKIEDVL GVNNVHVWNL TNTDTVGTFQ LHVSAEADKS SIRNKASRIF QEAGVQDLII EIECVKR

Best Arabidopsis Sequence Match ( AT2G04620.1 )
(BLAST)

001: MVDHHHHHHH QHRPNRLSVP QPTIGRTYPS FPYTPTPTPS KTRLSSSSSY RSIHGSKSSL SFLFLILFSL RSLYSLLPFL RSSPSFSLFP FSFLVSLLSF
101: LFSLSFTIIS SFSPSKKDPF LLRLQNRSFS SISSLSSSQI KLLLAKSFLL AFVFLLRFQA LRYCGAAAMI LAELSGTVSA RVLFSDTGGI GVRSSKVRGF
201: CVLFAGLLLL SISWDRVDCF PFSSSVESWG FWIYPKENCL RIWPLLLPFL SGFLGCYEKV SVNWNEIKQL DQKRVRLLSL FLTTVLLFPL AIWSFFFSGS
301: GDDSVSFGNL GWPLANTVVF GVLLSENYND DKFSSSKKKD SEREFLVTFL CTIVLELFYF PELSLWGLLL CGLLLYIAVR ELESVYSDYQ EIGMESPESF
401: STMFMKPIRH ILSEKKSRKI ALFLLINTAY MVVEFVAGFM SNSLGLISDA CHMLFDCAAL AIGLYASYIS RLPANHQYNY GRGRFEVLSG YVNAVFLVLV
501: GALIVLESIE RILDPQEIST NSLLVVSVGG LLVNIVGLIF FHEEHHHAHG GSGCTHSHSH QSHSHKNEEH HQHSDSHKHE EHHQHSDSHK HEEHHEHDHH
601: HHSHSHKHEE CNHNHDHEHQ SHSHNHEECN HNHDHHSDHQ PEKSEKKEHR HIDHNMEGIF LHVLADTMGS VGVVISTLLI KYKGWLVADP ASSIFISILI
701: IASVIPLLRN SAEILLQRVP RAHRQDLKEA MRNILKTKGV CSIQRLHVWS FTNSDVVATL HLLVSADSDK TDTKLQVSRL LEDAGVKDWT LQVESVNS

Arabidopsis Description

Metal tolerance protein 12 [Source:UniProtKB/TrEMBL;Acc:A0A0A8IL98]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.