Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- golgi 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G149400.1 | |
| TraesCS6B01G177300.1 | |
| TraesCS6D01G138700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G04620.1 | TraesCS6A01G149400.1 | AT1G16070.1 | 16792696 |
| AT2G04620.1 | TraesCS6B01G177300.1 | AT1G16070.1 | 16792696 |
| AT2G04620.1 | TraesCS6D01G138700.1 | AT1G16070.1 | 16792696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G025050.1 | Barley | endoplasmic reticulum, plasma membrane | 55.57 | 91.95 |
| TraesCS2D01G144900.1 | Wheat | plastid | 88.86 | 88.63 |
| TraesCS2B01G166400.1 | Wheat | plastid | 89.63 | 87.72 |
| Os08t0422200-00 | Rice | cytosol | 20.36 | 70.67 |
| EES15000 | Sorghum | plastid | 65.17 | 63.86 |
| Zm00001d050335_P001 | Maize | plastid | 61.72 | 61.25 |
| Zm00001d032262_P001 | Maize | plasma membrane, plastid | 61.2 | 60.51 |
| CDY30837 | Canola | plasma membrane, plastid | 42.38 | 43.04 |
| CDY30290 | Canola | plasma membrane, plastid | 41.61 | 42.93 |
| Bra025618.1-P | Field mustard | plasma membrane, plastid | 42.0 | 42.88 |
| AT2G04620.1 | Thale cress | plasma membrane | 42.13 | 41.23 |
| KRH42631 | Soybean | endoplasmic reticulum, nucleus, plasma membrane, plastid | 38.8 | 38.5 |
| PGSC0003DMT400017877 | Potato | plasma membrane | 41.87 | 36.62 |
| Solyc02g067620.1.1 | Tomato | nucleus | 41.74 | 36.14 |
| VIT_14s0066g02030.t01 | Wine grape | endoplasmic reticulum, golgi, nucleus | 39.05 | 27.68 |
| TraesCS5A01G499000.1 | Wheat | plasma membrane | 12.55 | 25.19 |
| TraesCS1A01G071800.1 | Wheat | peroxisome | 13.44 | 25.18 |
Protein Annotations
| Gene3D:1.20.1510.10 | MapMan:24.2.9.2.3 | InterPro:Cation_efflux | InterPro:Cation_efflux_CTD_sf | InterPro:Cation_efflux_TMD_sf | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006812 | GO:GO:0008150 | GO:GO:0008324 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR027469 | InterPro:IPR036837 | PFAM:PF01545 |
| PANTHER:PTHR11562 | PANTHER:PTHR11562:SF13 | SUPFAM:SSF160240 | SUPFAM:SSF161111 | TIGRFAMs:TIGR01297 | TMHMM:TMhelix |
| EnsemblPlantsGene:TraesCS2A01G141400 | EnsemblPlants:TraesCS2A01G141400.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2A:+:86898865..86901210
Molecular Weight (calculated)
84625.9 Da
IEP (calculated)
7.539
GRAVY (calculated)
0.152
Length
781 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPHRAFPD PPPMAAFRSG RHAAHLRLAV PPRLAAHPSF RFPTTPLPTP SKTRLPAAGA ASPYAAALLR ILALHSLFLL APAARALPSL PHLFLLPPVL
101: AIISAVAILL IPSKSQPHPF PALRHLFRPA LLLAASLLLR LASLHLITDP GLIVLADSAG ALLARALNRP SRRRVISVAA ASVSLAAASP SHSVLLLVLP
201: FASGLLSSVE HSVSARHVTR SRHARAAVFA LAATFLSAPA LAGLFFLGGT DTSDGVPIGQ LWWLLLNAAV FGMALGRRQA YDSSSSSSRP SMNFAMTFVC
301: TIVLELVYYP KLSLPGFLIC GFVLWIASRE LTSSGYVELG STDESVYEAV MGPVRHILSE RKSRKIAAFL LINTAYMFVE FASGFMSDSL GLLSDACHML
401: FDCAALAIGL YASYIARLPA NGLYNYGRGR FEVLSGYVNA VFLVLVGALI VLESFERILE PREISTSSLL AVSVGGLFVN IIGLVFFHEE HHHAHGGSCS
501: HSHSHSHNHG HEDHHHHHDH VHQTADHEKT CSGHHGDTNK SHHQNHQHDS NNAENHHQHN HGCSHKHGHN GHMEHHQQGV DQAHQDCSSI SSEQGLLEIP
601: LINVHSHGAE SQSCNGEVES PEIGNHGKTA SRRHIDHNME GIFLHVLADT MGSVGVVIST LLIKYKGWLI ADPICSVFIS IMIVASVLPL LRNSAEILLQ
701: RVPRSHEKDF EAALDDVKKI NGVIGVHNVH LWNLTNTDIV GTFHLHISAE ADKSVTRESA SRIFQEAGVQ DLTIQIECVE R
101: AIISAVAILL IPSKSQPHPF PALRHLFRPA LLLAASLLLR LASLHLITDP GLIVLADSAG ALLARALNRP SRRRVISVAA ASVSLAAASP SHSVLLLVLP
201: FASGLLSSVE HSVSARHVTR SRHARAAVFA LAATFLSAPA LAGLFFLGGT DTSDGVPIGQ LWWLLLNAAV FGMALGRRQA YDSSSSSSRP SMNFAMTFVC
301: TIVLELVYYP KLSLPGFLIC GFVLWIASRE LTSSGYVELG STDESVYEAV MGPVRHILSE RKSRKIAAFL LINTAYMFVE FASGFMSDSL GLLSDACHML
401: FDCAALAIGL YASYIARLPA NGLYNYGRGR FEVLSGYVNA VFLVLVGALI VLESFERILE PREISTSSLL AVSVGGLFVN IIGLVFFHEE HHHAHGGSCS
501: HSHSHSHNHG HEDHHHHHDH VHQTADHEKT CSGHHGDTNK SHHQNHQHDS NNAENHHQHN HGCSHKHGHN GHMEHHQQGV DQAHQDCSSI SSEQGLLEIP
601: LINVHSHGAE SQSCNGEVES PEIGNHGKTA SRRHIDHNME GIFLHVLADT MGSVGVVIST LLIKYKGWLI ADPICSVFIS IMIVASVLPL LRNSAEILLQ
701: RVPRSHEKDF EAALDDVKKI NGVIGVHNVH LWNLTNTDIV GTFHLHISAE ADKSVTRESA SRIFQEAGVQ DLTIQIECVE R
001: MILAELSGTV SARVLFSDTG GIGVRSSKVR GFCVLFAGLL LLSISWDRVD CFPFSSSVES WGFWIYPKEN CLRIWPLLLP FLSGFLGCYE KVSVNWNEIK
101: QLDQKRVRLL SLFLTTVLLF PLAIWSFFFS GSGDDSVSFG NLGWPLANTV VFGVLLSENY NDDKFSSSKK KDSEREFLVT FLCTIVLELF YFPELSLWGL
201: LLCGLLLYIA VRELESVYSD YQEIGMESPE SFSTMFMKPI RHILSEKKSR KIALFLLINT AYMVVEFVAG FMSNSLGLIS DACHMLFDCA ALAIGLYASY
301: ISRLPANHQY NYGRGRFEVL SGYVNAVFLV LVGALIVLES IERILDPQEI STNSLLVVSV GGLLVNIVGL IFFHEEHHHA HGGSGCTHSH SHQSHSHKNE
401: EHHQHSDSHK HEEHHEHDHH HHSHSHKHEE CNHNHDHEHQ SHSHNHEECN HNHDHHSDHQ PEKSEKKEHR HIDHNMEGIF LHVLADTMGS VGVVISTLLI
501: KYKGWLVADP ASSIFISILI IASVIPLLRN SAEILLQRVP RAHRQDLKEA MRNILKTKGV CSIQRLHVWS FTNSDVVATL HLLVSADSDK TDTKLQVSRL
601: LEDAGVKDWT LQVESVNS
101: QLDQKRVRLL SLFLTTVLLF PLAIWSFFFS GSGDDSVSFG NLGWPLANTV VFGVLLSENY NDDKFSSSKK KDSEREFLVT FLCTIVLELF YFPELSLWGL
201: LLCGLLLYIA VRELESVYSD YQEIGMESPE SFSTMFMKPI RHILSEKKSR KIALFLLINT AYMVVEFVAG FMSNSLGLIS DACHMLFDCA ALAIGLYASY
301: ISRLPANHQY NYGRGRFEVL SGYVNAVFLV LVGALIVLES IERILDPQEI STNSLLVVSV GGLLVNIVGL IFFHEEHHHA HGGSGCTHSH SHQSHSHKNE
401: EHHQHSDSHK HEEHHEHDHH HHSHSHKHEE CNHNHDHEHQ SHSHNHEECN HNHDHHSDHQ PEKSEKKEHR HIDHNMEGIF LHVLADTMGS VGVVISTLLI
501: KYKGWLVADP ASSIFISILI IASVIPLLRN SAEILLQRVP RAHRQDLKEA MRNILKTKGV CSIQRLHVWS FTNSDVVATL HLLVSADSDK TDTKLQVSRL
601: LEDAGVKDWT LQVESVNS
Arabidopsis Description
Metal tolerance protein 12 [Source:UniProtKB/TrEMBL;Acc:A0A0A8IL98]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.