CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY05258
CDY24698
CDY35067
CDY69989

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04620.1	CDY35067	AT1G16070.1	16792696
AT2G04620.1	CDY69989	AT1G16070.1	16792696
AT2G04620.1	CDY05258	AT3G06380.1	16792696
AT2G04620.1	CDY24698	AT3G06380.1	16792696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025618.1-P	Field mustard	plasma membrane, plastid	97.01	97.52
CDY30290	Canola	plasma membrane, plastid	91.16	92.6
AT2G04620.1	Thale cress	plasma membrane	75.81	73.06
KRH42631	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	55.27	54.0
PGSC0003DMT400017877	Potato	plasma membrane	60.73	52.3
Solyc02g067620.1.1	Tomato	nucleus	60.34	51.44
Os08t0422200-00	Rice	cytosol	13.78	47.11
HORVU2Hr1G025050.1	Barley	endoplasmic reticulum, plasma membrane	26.79	43.64
TraesCS2A01G141400.1	Wheat	plastid	43.04	42.38
TraesCS2B01G166400.1	Wheat	plastid	43.3	41.73
TraesCS2D01G144900.1	Wheat	plastid	42.39	41.63
EES15000	Sorghum	plastid	42.13	40.65
Zm00001d032262_P001	Maize	plasma membrane, plastid	41.35	40.25
Zm00001d050335_P001	Maize	plastid	40.7	39.77
VIT_14s0066g02030.t01	Wine grape	endoplasmic reticulum, golgi, nucleus	49.28	34.39
CDY68480	Canola	plasma membrane	4.94	25.17
CDY41560	Canola	plasma membrane	10.53	24.62
CDY38099	Canola	golgi, peroxisome, plasma membrane	10.79	22.68
CDY51370	Canola	cytosol, golgi, plasma membrane	7.15	22.63
CDY55925	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	7.8	22.56
CDX97888	Canola	plasma membrane	7.67	22.26
CDY40170	Canola	extracellular, plasma membrane	3.64	22.22
CDX80048	Canola	golgi, peroxisome, plasma membrane	10.66	21.81
CDX83353	Canola	golgi, peroxisome, plasma membrane	10.53	21.04
CDY48014	Canola	plasma membrane	12.48	20.08
CDY09860	Canola	golgi, plasma membrane, vacuole	8.84	19.94
CDY11385	Canola	cytosol	2.6	19.61
CDY68481	Canola	cytosol	1.43	17.74

Protein Annotations

Gene3D:1.20.1510.10	MapMan:24.2.9.2.3	GO:A0A078H023	UniProt:A0A078H023	EnsemblPlants:CDY30837	ProteinID:CDY30837
ProteinID:CDY30837.1	InterPro:Cation_efflux	InterPro:Cation_efflux_TMD_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	GO:GO:0098655	EnsemblPlantsGene:GSBRNA2T00046304001	InterPro:IPR027469	PFAM:PF01545	PANTHER:PTHR11562
PANTHER:PTHR11562:SF13	SUPFAM:SSF161111	TIGRFAMs:TIGR01297	TMHMM:TMhelix	UniParc:UPI0004EE0598	SEG:seg

Description

BnaC04g26920DBnaC04g26920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H023]

Coordinates

chrLK032262:+:14847..17156

Molecular Weight (calculated)

86672.9 Da

IEP (calculated)

7.170

GRAVY (calculated)

-0.007

Length

769 amino acids

Sequence
(BLAST)

001: MADHHHNHHQ QHRPNRLSLP ARSIGRAYPS FPYTPTPTPS KTRTRSNHGT TRSSISFLLL ILFSLRSLYS LLPFLRSSPS FSLFPFSFLV SLLSFLFSLA
101: FTLFSPSKKD SFLRHNRTAF SITLSQTKLI LAKSVFLAVV FLLRFQALRY CSAAAMILAE LSGTVSARVL SGDHGSSKVR GFCILFAGLL LLSISWDRVD
201: CFPFSSSSLQ NCLRIWPMLL PFLSGFLGCY EKVSMNWVEI KQLDQKRVRL ITLFLTTVLL FPLALWSFVE SDEAGVSIGN LGWPLANTVV FGVLLSESYN
301: DDKLKKDSER EFLVTFLCTI VLELFYFPEL SLWGLLLCGF LLYVAVRELD SSDYQEIGME SPESFSAVFM KPIRHILSEK KSRKIALFLL INTAYMVVEF
401: VAGFMSNSLG LISDACHMLF DCAALAIGLY ASYISRLPAN HQFNYGRGRF EVLSGYVNAV FLVLVGALIV LESIERILDP QEISTSSLLV VSVGGLLVNV
501: VGLIFFHEEH HHAHGGGSGC THSHSHQSHK HEEHHDHDDH QHHSHSHKHE EHHDHDHDHH QHHSHNHKNE ESHDHNHDHH HHSHSHTHEE HHEDNHSHGN
601: DHGHHHHSDH KPAKGEIKEH HHIDHNMEGI FLHVLADTMG SVGVVVSTLL IKYKGWLVAD PASSIFISIL IIASVIPLLR NSAGILLQRV PKAHEHDLRE
701: AMRNILKTKG VCSIQRLHVW SFTNSDVVAT LHLLVSGDSD KTDTKLQVSH LLEDAGVKDL TLQVEFVNS

Best Arabidopsis Sequence Match ( AT2G04620.1 )
(BLAST)

001: MVDHHHHHHH QHRPNRLSVP QPTIGRTYPS FPYTPTPTPS KTRLSSSSSY RSIHGSKSSL SFLFLILFSL RSLYSLLPFL RSSPSFSLFP FSFLVSLLSF
101: LFSLSFTIIS SFSPSKKDPF LLRLQNRSFS SISSLSSSQI KLLLAKSFLL AFVFLLRFQA LRYCGAAAMI LAELSGTVSA RVLFSDTGGI GVRSSKVRGF
201: CVLFAGLLLL SISWDRVDCF PFSSSVESWG FWIYPKENCL RIWPLLLPFL SGFLGCYEKV SVNWNEIKQL DQKRVRLLSL FLTTVLLFPL AIWSFFFSGS
301: GDDSVSFGNL GWPLANTVVF GVLLSENYND DKFSSSKKKD SEREFLVTFL CTIVLELFYF PELSLWGLLL CGLLLYIAVR ELESVYSDYQ EIGMESPESF
401: STMFMKPIRH ILSEKKSRKI ALFLLINTAY MVVEFVAGFM SNSLGLISDA CHMLFDCAAL AIGLYASYIS RLPANHQYNY GRGRFEVLSG YVNAVFLVLV
501: GALIVLESIE RILDPQEIST NSLLVVSVGG LLVNIVGLIF FHEEHHHAHG GSGCTHSHSH QSHSHKNEEH HQHSDSHKHE EHHQHSDSHK HEEHHEHDHH
601: HHSHSHKHEE CNHNHDHEHQ SHSHNHEECN HNHDHHSDHQ PEKSEKKEHR HIDHNMEGIF LHVLADTMGS VGVVISTLLI KYKGWLVADP ASSIFISILI
701: IASVIPLLRN SAEILLQRVP RAHRQDLKEA MRNILKTKGV CSIQRLHVWS FTNSDVVATL HLLVSADSDK TDTKLQVSRL LEDAGVKDWT LQVESVNS

Arabidopsis Description

Metal tolerance protein 12 [Source:UniProtKB/TrEMBL;Acc:A0A0A8IL98]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.