Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80048 | Canola | golgi, peroxisome, plasma membrane | 96.66 | 84.57 |
| Bra004506.1-P | Field mustard | golgi, peroxisome, plasma membrane | 95.14 | 83.02 |
| CDX83353 | Canola | golgi, peroxisome, plasma membrane | 91.79 | 78.44 |
| CDY68481 | Canola | cytosol | 14.59 | 77.42 |
| AT2G46800.3 | Thale cress | golgi, peroxisome, plasma membrane | 90.58 | 74.87 |
| CDY55925 | Canola | endoplasmic reticulum, golgi, mitochondrion, plasma membrane | 57.75 | 71.43 |
| CDY68480 | Canola | plasma membrane | 32.52 | 70.86 |
| VIT_15s0048g02520.t01 | Wine grape | endoplasmic reticulum, golgi, peroxisome | 79.94 | 62.92 |
| KRH47778 | Soybean | peroxisome | 77.51 | 62.5 |
| CDY48014 | Canola | plasma membrane | 89.67 | 61.72 |
| CDY38099 | Canola | golgi, peroxisome, plasma membrane | 68.39 | 61.48 |
| KRH06350 | Soybean | peroxisome | 78.72 | 61.37 |
| CDY09860 | Canola | golgi, plasma membrane, vacuole | 59.88 | 57.77 |
| CDY11385 | Canola | cytosol | 16.41 | 52.94 |
| CDY51370 | Canola | cytosol, golgi, plasma membrane | 34.65 | 46.91 |
| CDY40170 | Canola | extracellular, plasma membrane | 16.72 | 43.65 |
| CDX97888 | Canola | plasma membrane | 34.95 | 43.4 |
| CDY30290 | Canola | plasma membrane, plastid | 24.32 | 10.57 |
| CDY30837 | Canola | plasma membrane, plastid | 24.62 | 10.53 |
Protein Annotations
| Gene3D:1.20.1510.10 | MapMan:24.2.9.2.3 | GO:A0A078HSN5 | UniProt:A0A078HSN5 | EnsemblPlants:CDY41560 | ProteinID:CDY41560 |
| ProteinID:CDY41560.1 | InterPro:Cation_efflux | InterPro:Cation_efflux_CTD_sf | InterPro:Cation_efflux_TMD_sf | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006812 | GO:GO:0008150 | GO:GO:0008324 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | GO:GO:0098655 | EnsemblPlantsGene:GSBRNA2T00073195001 | InterPro:IPR027469 | InterPro:IPR036837 |
| PFAM:PF01545 | PANTHER:PTHR11562 | PANTHER:PTHR11562:SF80 | SUPFAM:SSF160240 | SUPFAM:SSF161111 | SignalP:SignalP-TM |
| TIGRFAMs:TIGR01297 | TMHMM:TMhelix | UniParc:UPI0004EED3CC | SEG:seg | : | : |
Description
BnaC04g00620DBnaC04g00620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSN5]
Coordinates
chrLK032500:+:224092..225172
Molecular Weight (calculated)
36626.8 Da
IEP (calculated)
6.335
GRAVY (calculated)
0.351
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKLCIAVVL CLLFMTVEVF GGIKANSLAI LTDAAHLLSD VAAFAISLFS LWAAGWEATP RQTYGFFRIE ILGALVSIQL IWLLTGILVY EAIIRLLTET
101: SEVDGFLMFL VAAFGLLVNI VMAVLLGHDH GHSHGHGHNH GHDHQSHDGV TVTTHHHHGH SHDEDKHHSH GDVTEQLLDK SEKRKRNINV QGAYLHVLGD
201: SIQSVGVMIG GAIIWYKPEW KIVDLICTLV FSVIVLGTTI NMIRSILEVL MESTPREIDA TKLEQGLLEM EEVVAVHELH IWAITVGKVL LACHVNITPE
301: ADADMVLNKV IDYIRREYNI SHVTIQIER
101: SEVDGFLMFL VAAFGLLVNI VMAVLLGHDH GHSHGHGHNH GHDHQSHDGV TVTTHHHHGH SHDEDKHHSH GDVTEQLLDK SEKRKRNINV QGAYLHVLGD
201: SIQSVGVMIG GAIIWYKPEW KIVDLICTLV FSVIVLGTTI NMIRSILEVL MESTPREIDA TKLEQGLLEM EEVVAVHELH IWAITVGKVL LACHVNITPE
301: ADADMVLNKV IDYIRREYNI SHVTIQIER
001: MESSSPHHSH IVEVNVGKSD EERIIVASKV CGEAPCGFSD SKNASGDAHE RSASMRKLCI AVVLCLVFMS VEVVGGIKAN SLAILTDAAH LLSDVAAFAI
101: SLFSLWAAGW EATPRQTYGF FRIEILGALV SIQLIWLLTG ILVYEAIIRI VTETSEVNGF LMFLVAAFGL VVNIIMAVLL GHDHGHSHGH GHGHGHDHHN
201: HSHGVTVTTH HHHHDHEHGH SHGHGEDKHH AHGDVTEQLL DKSKTQVAAK EKRKRNINLQ GAYLHVLGDS IQSVGVMIGG AIIWYNPEWK IVDLICTLAF
301: SVIVLGTTIN MIRNILEVLM ESTPREIDAT KLEKGLLEME EVVAVHELHI WAITVGKVLL ACHVNIRPEA DADMVLNKVI DYIRREYNIS HVTIQIER
101: SLFSLWAAGW EATPRQTYGF FRIEILGALV SIQLIWLLTG ILVYEAIIRI VTETSEVNGF LMFLVAAFGL VVNIIMAVLL GHDHGHSHGH GHGHGHDHHN
201: HSHGVTVTTH HHHHDHEHGH SHGHGEDKHH AHGDVTEQLL DKSKTQVAAK EKRKRNINLQ GAYLHVLGDS IQSVGVMIGG AIIWYNPEWK IVDLICTLAF
301: SVIVLGTTIN MIRNILEVLM ESTPREIDAT KLEKGLLEME EVVAVHELHI WAITVGKVLL ACHVNIRPEA DADMVLNKVI DYIRREYNIS HVTIQIER
Arabidopsis Description
MTP1ZAT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VQA0]
SUBAcon: [peroxisome,golgi,plasma membrane]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.