CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55925	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	93.38	53.01
AT3G61940.1	Thale cress	plasma membrane	83.44	37.72
CDY41560	Canola	plasma membrane	70.86	32.52
CDX80048	Canola	golgi, peroxisome, plasma membrane	70.86	28.46
CDX83353	Canola	golgi, peroxisome, plasma membrane	71.52	28.05
CDY38099	Canola	golgi, peroxisome, plasma membrane	62.25	25.68
CDY09860	Canola	golgi, plasma membrane, vacuole	54.97	24.34
CDY48014	Canola	plasma membrane	72.85	23.01
CDY51370	Canola	cytosol, golgi, plasma membrane	30.46	18.93
CDX97888	Canola	plasma membrane	30.46	17.36
CDY40170	Canola	extracellular, plasma membrane	9.27	11.11
CDY30837	Canola	plasma membrane, plastid	25.17	4.94
CDY30290	Canola	plasma membrane, plastid	24.5	4.89
CDY11385	Canola	cytosol	1.32	1.96
CDY68481	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1510.10	MapMan:24.2.9.2.3	GO:A0A078JPV8	UniProt:A0A078JPV8	EnsemblPlants:CDY68480	ProteinID:CDY68480
ProteinID:CDY68480.1	InterPro:Cation_efflux	InterPro:Cation_efflux_TMD_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	GO:GO:0098655	EnsemblPlantsGene:GSBRNA2T00074797001	InterPro:IPR027469	PFAM:PF01545	PANTHER:PTHR11562
PANTHER:PTHR11562:SF80	SUPFAM:SSF161111	TIGRFAMs:TIGR01297	TMHMM:TMhelix	UniParc:UPI0004EDB5FB	SEG:seg

Description

BnaA04g27490DBnaA04g27490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JPV8]

Coordinates

chrLK037408:+:756..1211

Molecular Weight (calculated)

16952.5 Da

IEP (calculated)

6.505

GRAVY (calculated)

0.154

Length

151 amino acids

Sequence
(BLAST)

001: MLSLWASSWE ANPRQSYGFF RIEILGALVS IQLIWLLTGI LVYEAITRLI QQTNDDVDGF FMVLVAAFGL VVNIIMIVVL GHDHSHSHSH SHNHGVHDHE
101: HGHGDNDEQL LEKPKVRRNI NVQGAYLHVL GDLIQSIGVM IGGGMIWYNP K

Best Arabidopsis Sequence Match ( AT2G46800.1 )
(BLAST)

001: MESSSPHHSH IVEVNVGKSD EERIIVASKV CGEAPCGFSD SKNASGDAHE RSASMRKLCI AVVLCLVFMS VEVVGGIKAN SLAILTDAAH LLSDVAAFAI
101: SLFSLWAAGW EATPRQTYGF FRIEILGALV SIQLIWLLTG ILVYEAIIRI VTETSEVNGF LMFLVAAFGL VVNIIMAVLL GHDHGHSHGH GHGHGHDHHN
201: HSHGVTVTTH HHHHDHEHGH SHGHGEDKHH AHGDVTEQLL DKSKTQVAAK EKRKRNINLQ GAYLHVLGDS IQSVGVMIGG AIIWYNPEWK IVDLICTLAF
301: SVIVLGTTIN MIRNILEVLM ESTPREIDAT KLEKGLLEME EVVAVHELHI WAITVGKVLL ACHVNIRPEA DADMVLNKVI DYIRREYNIS HVTIQIER

Arabidopsis Description

MTP1ZAT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VQA0]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.