CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

plastid 2
golgi 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68481	Canola	cytosol	21.8	93.55
CDY68480	Canola	plasma membrane	53.01	93.38
CDY41560	Canola	plasma membrane	71.43	57.75
CDY11385	Canola	cytosol	21.43	55.88
AT3G61940.1	Thale cress	plasma membrane	69.92	55.69
CDX80048	Canola	golgi, peroxisome, plasma membrane	71.43	50.53
CDX83353	Canola	golgi, peroxisome, plasma membrane	72.18	49.87
CDY38099	Canola	golgi, peroxisome, plasma membrane	63.91	46.45
CDY09860	Canola	golgi, plasma membrane, vacuole	54.14	42.23
CDY40170	Canola	extracellular, plasma membrane	19.92	42.06
CDY48014	Canola	plasma membrane	73.68	41.0
CDY51370	Canola	cytosol, golgi, plasma membrane	36.09	39.51
CDX97888	Canola	plasma membrane	34.96	35.09
CDY30837	Canola	plasma membrane, plastid	22.56	7.8
CDY30290	Canola	plasma membrane, plastid	21.43	7.53

Protein Annotations

Gene3D:1.20.1510.10	MapMan:24.2.9.2.3	GO:A0A078J1S0	UniProt:A0A078J1S0	EnsemblPlants:CDY55925	ProteinID:CDY55925
ProteinID:CDY55925.1	InterPro:Cation_efflux	InterPro:Cation_efflux_CTD_sf	InterPro:Cation_efflux_TMD_sf	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	GO:GO:0098655	EnsemblPlantsGene:GSBRNA2T00017524001	InterPro:IPR027469	InterPro:IPR036837
PFAM:PF01545	PANTHER:PTHR11562	PANTHER:PTHR11562:SF80	SUPFAM:SSF160240	SUPFAM:SSF161111	TIGRFAMs:TIGR01297
TMHMM:TMhelix	UniParc:UPI0004EE0CEB	SEG:seg	:	:	:

Description

BnaCnng29540DBnaCnng29540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1S0]

Coordinates

chrLK033440:+:10995..16755

Molecular Weight (calculated)

30395.0 Da

IEP (calculated)

6.255

GRAVY (calculated)

0.189

Length

266 amino acids

Sequence
(BLAST)

001: MLSLWASSWE ANPRQSYGFF RIEILGALVS IQLIWLLTGI LVYEAITRLI QQTNDDVDGF FMVLVAAFGL VVNIIMIVVL GHDHSHSHSH SHNHGVHDHE
101: HDNDEQLLEK PKEGRNINVQ GAYLHVLGDL IQSIGVMIGG GMIWYNPKWK IIDHICTLVF SIIFLGTTLH WNSFLTKTML RSILDVLMES TPREIDAKQL
201: EKGLMEIEEV VSVHELHIWA ITVGKVLFSC HVKIKQEAND AMVLNKVTDY IWREYSISHV TIQIER

Best Arabidopsis Sequence Match ( AT2G46800.1 )
(BLAST)

001: MESSSPHHSH IVEVNVGKSD EERIIVASKV CGEAPCGFSD SKNASGDAHE RSASMRKLCI AVVLCLVFMS VEVVGGIKAN SLAILTDAAH LLSDVAAFAI
101: SLFSLWAAGW EATPRQTYGF FRIEILGALV SIQLIWLLTG ILVYEAIIRI VTETSEVNGF LMFLVAAFGL VVNIIMAVLL GHDHGHSHGH GHGHGHDHHN
201: HSHGVTVTTH HHHHDHEHGH SHGHGEDKHH AHGDVTEQLL DKSKTQVAAK EKRKRNINLQ GAYLHVLGDS IQSVGVMIGG AIIWYNPEWK IVDLICTLAF
301: SVIVLGTTIN MIRNILEVLM ESTPREIDAT KLEKGLLEME EVVAVHELHI WAITVGKVLL ACHVNIRPEA DADMVLNKVI DYIRREYNIS HVTIQIER

Arabidopsis Description

MTP1ZAT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VQA0]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.