CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	golgi, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41560	Canola	plasma membrane	84.57	96.66
Bra004506.1-P	Field mustard	golgi, peroxisome, plasma membrane	94.41	94.16
CDX83353	Canola	golgi, peroxisome, plasma membrane	91.49	89.35
AT2G46800.3	Thale cress	golgi, peroxisome, plasma membrane	87.77	82.91
CDY68481	Canola	cytosol	12.77	77.42
CDY55925	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	50.53	71.43
CDY68480	Canola	plasma membrane	28.46	70.86
VIT_15s0048g02520.t01	Wine grape	endoplasmic reticulum, golgi, peroxisome	75.27	67.7
KRH47778	Soybean	peroxisome	72.07	66.42
CDY48014	Canola	plasma membrane	83.78	65.9
KRH06350	Soybean	peroxisome	73.4	65.4
CDY38099	Canola	golgi, peroxisome, plasma membrane	63.3	65.03
CDY09860	Canola	golgi, plasma membrane, vacuole	54.52	60.12
CDY11385	Canola	cytosol	14.63	53.92
CDY51370	Canola	cytosol, golgi, plasma membrane	31.12	48.15
CDX97888	Canola	plasma membrane	32.71	46.42
CDY40170	Canola	extracellular, plasma membrane	14.63	43.65
CDY30837	Canola	plasma membrane, plastid	21.81	10.66
CDY30290	Canola	plasma membrane, plastid	21.28	10.57

Protein Annotations

Gene3D:1.20.1510.10	MapMan:24.2.9.2.3	GO:A0A078CY86	EnsemblPlants:CDX80048	ProteinID:CDX80048	ProteinID:CDX80048.1
InterPro:Cation_efflux	InterPro:Cation_efflux_CTD_sf	InterPro:Cation_efflux_TMD_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00132934001	InterPro:IPR027469	InterPro:IPR036837	PFAM:PF01545	PANTHER:PTHR11562
PANTHER:PTHR11562:SF80	SUPFAM:SSF160240	SUPFAM:SSF161111	TIGRFAMs:TIGR01297	TMHMM:TMhelix	UniParc:UPI0004EF109B
SEG:seg	:	:	:	:	:

Description

BnaA05g01080D

Coordinates

chrLK031819:+:1559931..1562945

Molecular Weight (calculated)

41499.4 Da

IEP (calculated)

6.097

GRAVY (calculated)

0.237

Length

376 amino acids

Sequence
(BLAST)

001: MEPSSPQHSH IIEVNASKSD EERTTTLGSV KVCGETPCHL NNASGDAEER TASMRKLCIA VVLCLLFMTV EVFGGIKANS LAILTDAAHL LSDVAAFAIS
101: LFSLWAAGWE ATPRQTYGFF RIEILGALVS IQLIWLLTGI LVYEAIIRLL TETSEVDGFL MFLVAAFGLL VNIVMAVLLG HDHGHGHGHD HHDHGGVTVT
201: THHHHGHSHG EDKHHSHGDV TEQLLDKSEK RKRNINVQGA YLHVLGDSIQ SVGVMIGGAI IWYKPEWKIV DLICTLVFSV IVLGTTINMI RSILEVLMES
301: TPREIDATKL EQGLLEMEEV VAVHELHIWA ITVGKVLLAC HVNITPEADA DMVLNKVIDY IRREYNISHV TIQIER

Best Arabidopsis Sequence Match ( AT2G46800.2 )
(BLAST)

001: MESSSPHHSH IVEVNVGKSD EERIIVASKV CGEAPCGFSD SKNASGDAHE RSASMRKLCI AVVLCLVFMS VEVVGGIKAN SLAILTDAAH LLSDVAAFAI
101: SLFSLWAAGW EATPRQTYGF FRIEILGALV SIQLIWLLTG ILVYEAIIRI VTETSEVNGF LMFLVAAFGL VVNIIMAVLL GHDHGHSHGH GHGHGHDHHN
201: HSHGVTVTTH HHHHDHEHGH SHGHGEDKHH AHGDVTEQLL DKSKTQVAAK EKRKRNINLQ GAYLHVLGDS IQSVGVMIGG AIIWYNPEWK IVDLICTLAF
301: SVIVLGTTIN MIRNILEVLM ESTPREIDAT KLEKGLLEME EVVAVHELHI WAITVGKVLL ACHVNIRPEA DADMVLNKVI DYIRREYNIS HVTIQIER

Arabidopsis Description

MTP1ZAT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VQA0]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.