Factsheet for VIT_15s0048g02520.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, peroxisome

Predictor Summary:

nucleus 1
plasma membrane 2
golgi 2
vacuole 2
extracellular 1
endoplasmic reticulum 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, peroxisome
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	golgi
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41560	Canola	plasma membrane	62.92	79.94
CDX83353	Canola	golgi, peroxisome, plasma membrane	70.1	76.1
Bra000432.1-P	Field mustard	golgi, peroxisome, plasma membrane	69.38	75.32
CDX80048	Canola	golgi, peroxisome, plasma membrane	67.7	75.27
AT2G46800.3	Thale cress	golgi, peroxisome, plasma membrane	71.53	75.13
Bra004506.1-P	Field mustard	golgi, peroxisome, plasma membrane	66.51	73.74
KRH47778	Soybean	peroxisome	68.66	70.34
KRH06350	Soybean	peroxisome	69.38	68.72
VIT_02s0025g02900.t01	Wine grape	mitochondrion, plasma membrane	70.81	62.18
CDY48014	Canola	plasma membrane	66.99	58.58
Bra007643.1-P	Field mustard	cytosol	11.48	47.06
CDY11385	Canola	cytosol	11.48	47.06
VIT_06s0004g05540.t01	Wine grape	plasma membrane	44.74	45.28
VIT_14s0066g02030.t01	Wine grape	endoplasmic reticulum, golgi, nucleus	20.57	7.8

Protein Annotations

Gene3D:1.20.1510.10	EntrezGene:100259043	wikigene:100259043	MapMan:24.2.9.2.3	EMBL:AM487016	ProteinID:CAN75453
ProteinID:CAN75453.1	ProteinID:CCB61304	ProteinID:CCB61304.1	InterPro:Cation_efflux	InterPro:Cation_efflux_CTD_sf	InterPro:Cation_efflux_TMD_sf
UniProt:F6I2Y7	EMBL:FN596739	GO:GO:0003674	GO:GO:0005215	GO:GO:0005385	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0006812
GO:GO:0008150	GO:GO:0008324	GO:GO:0009987	GO:GO:0010043	GO:GO:0016020	GO:GO:0016021
GO:GO:0019725	GO:GO:0055085	GO:GO:0061088	GO:GO:0071577	GO:GO:0098655	InterPro:IPR027469
InterPro:IPR036837	EntrezGene:LOC100259043	wikigene:LOC100259043	PFAM:PF01545	PANTHER:PTHR11562	PANTHER:PTHR11562:SF80
SUPFAM:SSF160240	SUPFAM:SSF161111	TIGR:TC69472	TIGRFAMs:TIGR01297	TMHMM:TMhelix	UniParc:UPI0001984DF8
ArrayExpress:VIT_15s0048g02520	EnsemblPlantsGene:VIT_15s0048g02520	EnsemblPlants:VIT_15s0048g02520.t01	unigene:Vvi.23844	RefSeq:XP_002266346	RefSeq:XP_002266346.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr15:-:16679096..16681509

Molecular Weight (calculated)

46152.5 Da

IEP (calculated)

6.334

GRAVY (calculated)

-0.006

Length

418 amino acids

Sequence
(BLAST)

001: MTITSEMEAQ NLQHSQIIEI SVDVPAGGRS TGASKICGEA PCGFSDSGSS SKDAKERSAS MRKLLIAVIL CAVFMSVEVA GGIKANSLAI LTDAAHLLSD
101: VAAFAISLFS LWATGWEATP RQSYGFFRVE ILGALVSIQM IWLLAGILVY EAIVRLIHDT GEVNGFLMFL VATFGLVVNI MMAFLLGHDH AHGGHGHDHG
201: HSHNDHDHGH GHSHGMKITT HHHHHHEHHS KDDEHHSKDD EHHHTHEDPS EPLLKNSSQE GNQPECKNEE KRGRNINVQG AYLHVLGDSI QSIGVMIGGA
301: IIWIKPDWKI VDLICTLIFS VIVLGTTIKM LRSILEVLME STPREIDATM LEKGLCEMDE VVAVHELHIW AITVGKVLLA CHVKVRPEAN TDMVLDNVIN
401: YIRREYNISH VTIQIERE

Best Arabidopsis Sequence Match ( AT2G46800.2 )
(BLAST)

001: MESSSPHHSH IVEVNVGKSD EERIIVASKV CGEAPCGFSD SKNASGDAHE RSASMRKLCI AVVLCLVFMS VEVVGGIKAN SLAILTDAAH LLSDVAAFAI
101: SLFSLWAAGW EATPRQTYGF FRIEILGALV SIQLIWLLTG ILVYEAIIRI VTETSEVNGF LMFLVAAFGL VVNIIMAVLL GHDHGHSHGH GHGHGHDHHN
201: HSHGVTVTTH HHHHDHEHGH SHGHGEDKHH AHGDVTEQLL DKSKTQVAAK EKRKRNINLQ GAYLHVLGDS IQSVGVMIGG AIIWYNPEWK IVDLICTLAF
301: SVIVLGTTIN MIRNILEVLM ESTPREIDAT KLEKGLLEME EVVAVHELHI WAITVGKVLL ACHVNIRPEA DADMVLNKVI DYIRREYNIS HVTIQIER

Arabidopsis Description

MTP1ZAT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VQA0]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.