Factsheet for VIT_06s0004g05540.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
golgi 1
vacuole 1
mitochondrion 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076440.1.1	Tomato	plasma membrane	54.0	59.79
KRH24730	Soybean	endoplasmic reticulum, golgi, plasma membrane	55.45	59.02
CDY51370	Canola	cytosol, golgi, plasma membrane	34.38	58.44
PGSC0003DMT400077991	Potato	plasma membrane	53.75	58.42
KRH29739	Soybean	cytosol, endoplasmic reticulum, golgi	54.0	56.46
CDX97888	Canola	plasma membrane	35.59	55.47
Bra039979.1-P	Field mustard	cytosol, golgi, plasma membrane	46.97	54.65
CDY40170	Canola	extracellular, plasma membrane	15.5	50.79
AT2G29410.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	45.76	50.4
Bra018390.1-P	Field mustard	cytosol, golgi, plasma membrane	12.35	45.13
VIT_15s0048g02520.t01	Wine grape	endoplasmic reticulum, golgi, peroxisome	45.28	44.74
VIT_02s0025g02900.t01	Wine grape	mitochondrion, plasma membrane	43.83	38.03
VIT_14s0066g02030.t01	Wine grape	endoplasmic reticulum, golgi, nucleus	20.1	7.53

Protein Annotations

Gene3D:1.20.1510.10	EntrezGene:100255391	wikigene:100255391	MapMan:24.2.9.2.3	ProteinID:CCB43534	ProteinID:CCB43534.1
InterPro:Cation_efflux	InterPro:Cation_efflux_CTD_sf	InterPro:Cation_efflux_TMD_sf	UniProt:F6GUX6	EMBL:FN594951	GO:GO:0003674
GO:GO:0005215	GO:GO:0005385	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0009987
GO:GO:0010043	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0055085	GO:GO:0061088
GO:GO:0071577	GO:GO:0098655	InterPro:IPR027469	InterPro:IPR036837	EntrezGene:LOC100255391	wikigene:LOC100255391
PFAM:PF01545	PANTHER:PTHR11562	PANTHER:PTHR11562:SF54	SUPFAM:SSF160240	SUPFAM:SSF161111	TIGRFAMs:TIGR01297
TMHMM:TMhelix	UniParc:UPI00021091C8	ArrayExpress:VIT_06s0004g05540	EnsemblPlantsGene:VIT_06s0004g05540	EnsemblPlants:VIT_06s0004g05540.t01	RefSeq:XP_002280383
RefSeq:XP_002280383.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:6372694..6375992

Molecular Weight (calculated)

46603.2 Da

IEP (calculated)

6.416

GRAVY (calculated)

0.075

Length

413 amino acids

Sequence
(BLAST)

001: MEYFSPHRER IFPLKARQQW AFFFLVPSDS EMEDNEVSIR TEHQQEIEMS KASKENVLTM PSQLSCCHIC AFSQHEISRS ESEQRSKSSR KLCGLIIFYL
101: IFMAVEIVGG IKSNSLAVLT DAAHLLSDVF GFSISLFAVW ASGWRATSQQ SFGFNRVEVL GALFSVQLIW LIAGILIYEA VNRILHQHAK VNGKLMFAIA
201: AFGFISNLIM VTWLGHDHTH HDCGHKDHDH DHHDYHDHHH HHHHESDKPC SMDEEESTKL VSSSPEKTKI LNINLQGAYL HVMADLIQSV GVMVAGGIIW
301: AKPEWLMVDL VCTLCFSVLV LTTTLTMLRN IFSILMERAP IEIDIAGLEN GLKSIKGVQD VHDLHVWAIT VGKVVMSCHV IAEPGATSSE ILGDIRDYCE
401: KTYRILHVTV QVE

Best Arabidopsis Sequence Match ( AT2G29410.1 )
(BLAST)

001: MELEQICILK PDDEEEMESP SPSKTEENLG VVPLSCAFTR QEHCVSETKE REESTRRLSS LIFLYLIVMS VQIVGGFKAN SLAVMTDAAH LLSDVAGLCV
101: SLLAIKVSSW EANPRNSFGF KRLEVLAAFL SVQLIWLVSG VIIHEAIQRL LSRSREVNGE IMFGISAFGF FMNLVMVLWL GHNHSHHHHD HHHHHHNHKH
201: QHQHHHKEVV AEEEEEEMNP LKGEKSSSKE MNINIQGAYL HAMADMIQSL GVMIGGGIIW VKPKWVLVDL ICTLVFSAFA LAATLPILKN IFGILMERVP
301: RDMDIEKLER GLKRIDGVKI VYDLHVWEIT VGRIVLSCHI LPEPGASPKE IITGVRNFCR KSYGIYHATV QVESE

Arabidopsis Description

MTPBMetal tolerance protein B [Source:UniProtKB/Swiss-Prot;Acc:Q6DBM8]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.