Factsheet for PGSC0003DMT400077991

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
golgi 2
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076440.1.1	Tomato	plasma membrane	86.05	87.67
CDY51370	Canola	cytosol, golgi, plasma membrane	35.79	55.97
VIT_06s0004g05540.t01	Wine grape	plasma membrane	58.42	53.75
KRH24730	Soybean	endoplasmic reticulum, golgi, plasma membrane	53.68	52.58
CDX97888	Canola	plasma membrane	35.79	51.32
Bra039979.1-P	Field mustard	cytosol, golgi, plasma membrane	47.63	50.99
KRH29739	Soybean	cytosol, endoplasmic reticulum, golgi	52.37	50.38
AT2G29410.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	47.63	48.27
PGSC0003DMT400078996	Potato	plasma membrane	41.32	44.48
CDY40170	Canola	extracellular, plasma membrane	14.21	42.86
Bra018390.1-P	Field mustard	cytosol, golgi, plasma membrane	12.11	40.71
PGSC0003DMT400078898	Potato	golgi, peroxisome, plasma membrane	42.11	38.55
PGSC0003DMT400017877	Potato	plasma membrane	22.89	9.74

Protein Annotations

Gene3D:1.20.1510.10	EntrezGene:102602842	MapMan:24.2.9.2.3	InterPro:Cation_efflux	InterPro:Cation_efflux_CTD_sf	InterPro:Cation_efflux_TMD_sf
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150
GO:GO:0008324	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:0098655	InterPro:IPR027469
InterPro:IPR036837	UniProt:M1CZ67	PFAM:PF01545	EnsemblPlantsGene:PGSC0003DMG400030333	PGSC:PGSC0003DMG400030333	EnsemblPlants:PGSC0003DMT400077991
PANTHER:PTHR11562	PANTHER:PTHR11562:SF54	SUPFAM:SSF160240	SUPFAM:SSF161111	TIGRFAMs:TIGR01297	TMHMM:TMhelix
UniParc:UPI000294DE6C	RefSeq:XP_006350792.1	SEG:seg	:	:	:

Description

Metal tolerance protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030333]

Coordinates

chr6:+:56837940..56840493

Molecular Weight (calculated)

42498.3 Da

IEP (calculated)

6.306

GRAVY (calculated)

0.143

Length

380 amino acids

Sequence
(BLAST)

001: MEQQEDSMSE IKQLLGAKCN GNCNRAHFSC NPICSFSEQE HSLLDSRQRS KSSMKLCGLI IFYVMVMAVE TIGGVKAHSL AVLTDAAHLL SDVVGFSISL
101: FAVWVSGWDA TKEHSFGYHR LEVLGALISV QLIWLISGFL IYEATERMFH TNAKVNGKLM FAIAAFGLII NFISVLWLGH DHSLHSHSFS PCKDHDHGHD
201: HGHDHDHEMQ ELHPRNEEES SKLVAASHSC SKPSNINIEG AYLHVISDLI QSVGVMIAGA IMWYKPEWLV VDLLCTIFFS IFALSTTVPM LRTIFSLLME
301: RTPKDVDIIQ LENGLKSLAG VKDVHDLHVW AITIGKIVLS CHVVTEPGVD QYEIIQNVRE YCDTTYRIHH VTIQVEPGSL

Best Arabidopsis Sequence Match ( AT2G29410.1 )
(BLAST)

001: MELEQICILK PDDEEEMESP SPSKTEENLG VVPLSCAFTR QEHCVSETKE REESTRRLSS LIFLYLIVMS VQIVGGFKAN SLAVMTDAAH LLSDVAGLCV
101: SLLAIKVSSW EANPRNSFGF KRLEVLAAFL SVQLIWLVSG VIIHEAIQRL LSRSREVNGE IMFGISAFGF FMNLVMVLWL GHNHSHHHHD HHHHHHNHKH
201: QHQHHHKEVV AEEEEEEMNP LKGEKSSSKE MNINIQGAYL HAMADMIQSL GVMIGGGIIW VKPKWVLVDL ICTLVFSAFA LAATLPILKN IFGILMERVP
301: RDMDIEKLER GLKRIDGVKI VYDLHVWEIT VGRIVLSCHI LPEPGASPKE IITGVRNFCR KSYGIYHATV QVESE

Arabidopsis Description

MTPBMetal tolerance protein B [Source:UniProtKB/Swiss-Prot;Acc:Q6DBM8]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.