CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51370	Canola	cytosol, golgi, plasma membrane	65.87	34.16
CDX97888	Canola	plasma membrane	66.67	31.7
CDY68481	Canola	cytosol	12.7	25.81
AT2G29410.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	66.67	22.4
CDY55925	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	42.06	19.92
CDY41560	Canola	plasma membrane	43.65	16.72
KRH24730	Soybean	endoplasmic reticulum, golgi, plasma membrane	49.21	15.98
CDY11385	Canola	cytosol	12.7	15.69
VIT_06s0004g05540.t01	Wine grape	plasma membrane	50.79	15.5
KRH29739	Soybean	cytosol, endoplasmic reticulum, golgi	48.41	15.44
Solyc06g076440.1.1	Tomato	plasma membrane	44.44	15.01
CDX80048	Canola	golgi, peroxisome, plasma membrane	43.65	14.63
PGSC0003DMT400077991	Potato	plasma membrane	42.86	14.21
CDX83353	Canola	golgi, peroxisome, plasma membrane	42.86	14.03
CDY38099	Canola	golgi, peroxisome, plasma membrane	38.1	13.11
CDY48014	Canola	plasma membrane	43.65	11.51
CDY09860	Canola	golgi, plasma membrane, vacuole	30.95	11.44
CDY68480	Canola	plasma membrane	11.11	9.27
CDY30290	Canola	plasma membrane, plastid	22.22	3.7
CDY30837	Canola	plasma membrane, plastid	22.22	3.64

Protein Annotations

EnsemblPlants:CDY40170	EnsemblPlantsGene:GSBRNA2T00069296001	GO:A0A078HNQ6	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Cation_efflux_TMD_sf	InterPro:IPR027469	PANTHER:PTHR11562	PANTHER:PTHR11562:SF54	ProteinID:CDY40170	ProteinID:CDY40170.1
SEG:seg	SUPFAM:SSF161111	TMHMM:TMhelix	UniParc:UPI0004EE4990	UniProt:A0A078HNQ6	MapMan:24.2.9.2.3

Description

BnaC04g13980DBnaC04g13980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNQ6]

Coordinates

chrLK032465:-:75324..75704

Molecular Weight (calculated)

14262.4 Da

IEP (calculated)

9.380

GRAVY (calculated)

0.683

Length

126 amino acids

Sequence
(BLAST)

001: MADMIQSLGV LIGGGIIWVK PKWVLVDLIC TLVFSAFPLA ATLPMLKNIF WILMERAPRE MDIEKVERRL KRIKGVKIVH GLHVWEITVE GELYCLAMSC
101: PNPVLVLKRS FLMLEISVGK PVGFIM

Best Arabidopsis Sequence Match ( AT2G29410.1 )
(BLAST)

001: MELEQICILK PDDEEEMESP SPSKTEENLG VVPLSCAFTR QEHCVSETKE REESTRRLSS LIFLYLIVMS VQIVGGFKAN SLAVMTDAAH LLSDVAGLCV
101: SLLAIKVSSW EANPRNSFGF KRLEVLAAFL SVQLIWLVSG VIIHEAIQRL LSRSREVNGE IMFGISAFGF FMNLVMVLWL GHNHSHHHHD HHHHHHNHKH
201: QHQHHHKEVV AEEEEEEMNP LKGEKSSSKE MNINIQGAYL HAMADMIQSL GVMIGGGIIW VKPKWVLVDL ICTLVFSAFA LAATLPILKN IFGILMERVP
301: RDMDIEKLER GLKRIDGVKI VYDLHVWEIT VGRIVLSCHI LPEPGASPKE IITGVRNFCR KSYGIYHATV QVESE

Arabidopsis Description

MTPBMetal tolerance protein B [Source:UniProtKB/Swiss-Prot;Acc:Q6DBM8]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.