Factsheet for VIT_14s0066g02030.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, nucleus

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
vacuole 2
extracellular 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0018g01630.t01
VIT_12s0028g00190.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04620.1	VIT_09s0018g01630.t01	AT1G16070.1	16792696
AT2G04620.1	VIT_12s0028g00190.t01	AT3G06380.1	16792696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0422200-00	Rice	cytosol	11.16	54.67
CDY30290	Canola	plasma membrane, plastid	34.12	49.67
CDY30837	Canola	plasma membrane, plastid	34.39	49.28
Bra025618.1-P	Field mustard	plasma membrane, plastid	34.21	49.28
AT2G04620.1	Thale cress	plasma membrane	34.57	47.74
PGSC0003DMT400017877	Potato	plasma membrane	35.75	44.12
KRH42631	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	31.13	43.58
Solyc02g067620.1.1	Tomato	nucleus	35.48	43.35
Zm00001d032262_P001	Maize	plasma membrane, plastid	28.13	39.24
EES15000	Sorghum	plastid	28.31	39.15
TraesCS2A01G141400.1	Wheat	plastid	27.68	39.05
HORVU2Hr1G025050.1	Barley	endoplasmic reticulum, plasma membrane	16.61	38.77
Zm00001d050335_P001	Maize	plastid	27.59	38.63
TraesCS2D01G144900.1	Wheat	plastid	27.22	38.31
TraesCS2B01G166400.1	Wheat	plastid	27.4	37.84
VIT_15s0048g02520.t01	Wine grape	endoplasmic reticulum, golgi, peroxisome	7.8	20.57
VIT_06s0004g05540.t01	Wine grape	plasma membrane	7.53	20.1
VIT_02s0025g02900.t01	Wine grape	mitochondrion, plasma membrane	7.99	18.49

Protein Annotations

KEGG:00230+3.6.1.3	Gene3D:1.20.1510.10	EntrezGene:100266235	wikigene:100266235	MapMan:24.2.9.2.3	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:AAA_N_dom	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ProteinID:CCB58558	ProteinID:CCB58558.1
InterPro:Cation_efflux	InterPro:Cation_efflux_TMD_sf	ncoils:Coil	UniProt:F6HV40	EMBL:FN596252	GO:GO:0000166
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810
GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
GO:GO:0098655	InterPro:IPR027469	EntrezGene:LOC100266235	wikigene:LOC100266235	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF01545	PFAM:PF14363	ScanProsite:PS00674	PANTHER:PTHR23070	PANTHER:PTHR23070:SF5	SMART:SM00382
SUPFAM:SSF161111	SUPFAM:SSF52540	TIGRFAMs:TIGR01297	TMHMM:TMhelix	UniParc:UPI0002109E96	ArrayExpress:VIT_14s0066g02030
EnsemblPlantsGene:VIT_14s0066g02030	EnsemblPlants:VIT_14s0066g02030.t01	RefSeq:XP_002275755	RefSeq:XP_002275755.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:+:28291630..28299197

Molecular Weight (calculated)

124690.0 Da

IEP (calculated)

6.933

GRAVY (calculated)

-0.182

Length

1102 amino acids

Sequence
(BLAST)

0001: MSWYRIECFP LSSMIVDKWG FSLFPRENCV RVLPMLLPFL SGFLGCYERV SMNWGTIRQL GRKRVRLISL FFTTVILFVP AVVSILMFEA EGDEFSIASL
0101: GWPLANTVLF GVLLTENYSD EKLVSSRDFQ REFLVTFFCT LVLELFYFPE LSLWGLLLCG LLLYISVREL DPVYSNSLEL GMDSSESFTD SIVKPIRHVL
0201: SERKSRKIAL FLLINTGYMV VEFVSGFMSN SLGLISDACH MLFDCAALAI GLYASYISRL PANSQFNYGR GRFEVLSGYV NAVFLVLVGA LIVLESFERI
0301: LEPQEISTNS LLTVSIGGLL VNVVGLIFFH EEHHHAHGGS CSHSHSQSHS HSDLHHHSHA CGGHDHTVQV GHQECTSTSQ DCHEKSSIPA ISSRNLQSHS
0401: HEGHAGGNFH PEGSDPHTHA CTLDITNHSC AENSGSHLKP LLSDKEEPQK RNHKHIDHNM EGIFLHVLAD TMGSVGVVIS TLLIKYKGWQ VADPACSIFI
0501: SVLIVASVIP LLRNSAEILL QRVPRVHEHD LKDALKNVMK IRGVCGIQNL HVWSFTNTDV VGTLHLHIST EADKASTKVQ VSNILHDAGI KDLTVQVEYV
0601: KIEEEEERIV SMESKDMFGK VGSMVGSALF VWAIFQHYFP QCLADFIGRY YRKLVNFFNP YIEITFNEFT GQRGMRSEAY KDIQNYLGYN STRQASRLKG
0701: SLVKNGRSLV LGIDDYEEVV DVFEGVQVWW ISGKQNTNRR AISIYPVRGQ SDDKRYYTLL FHKRHWDLIS GPYLNYVLKE GKALKDRNRQ KKIYTNQEGD
0801: WHWVGFEHPA TFQTMALEPE KKKEIMEDLI AFSENQEYYR RIGRAWKRGY LLYGPPGTGK STMIAAIANL LNYDVYDLEL TGVENNTDLK MLLMEISSKA
0901: VIVIEDIDCS LDLTGQRKKA ETDEDSDEEE DEKGKKEGKE KGSKTSKVTL SGLLNFIDGL WSACGGERVI VFTTNHVEKL DQALIRKGRM DKHIELSYCS
1001: YEAFKVLAKN YLNVDSHPRF SKISELLGEV NMTPADVAEH LTIKTIMKDA GIRLEGLISA LERRKEARLA AIEDKREKKL AARGAKSSRK RNDRLRKYLN
1101: DQ

Best Arabidopsis Sequence Match ( AT2G04620.1 )
(BLAST)

001: MVDHHHHHHH QHRPNRLSVP QPTIGRTYPS FPYTPTPTPS KTRLSSSSSY RSIHGSKSSL SFLFLILFSL RSLYSLLPFL RSSPSFSLFP FSFLVSLLSF
101: LFSLSFTIIS SFSPSKKDPF LLRLQNRSFS SISSLSSSQI KLLLAKSFLL AFVFLLRFQA LRYCGAAAMI LAELSGTVSA RVLFSDTGGI GVRSSKVRGF
201: CVLFAGLLLL SISWDRVDCF PFSSSVESWG FWIYPKENCL RIWPLLLPFL SGFLGCYEKV SVNWNEIKQL DQKRVRLLSL FLTTVLLFPL AIWSFFFSGS
301: GDDSVSFGNL GWPLANTVVF GVLLSENYND DKFSSSKKKD SEREFLVTFL CTIVLELFYF PELSLWGLLL CGLLLYIAVR ELESVYSDYQ EIGMESPESF
401: STMFMKPIRH ILSEKKSRKI ALFLLINTAY MVVEFVAGFM SNSLGLISDA CHMLFDCAAL AIGLYASYIS RLPANHQYNY GRGRFEVLSG YVNAVFLVLV
501: GALIVLESIE RILDPQEIST NSLLVVSVGG LLVNIVGLIF FHEEHHHAHG GSGCTHSHSH QSHSHKNEEH HQHSDSHKHE EHHQHSDSHK HEEHHEHDHH
601: HHSHSHKHEE CNHNHDHEHQ SHSHNHEECN HNHDHHSDHQ PEKSEKKEHR HIDHNMEGIF LHVLADTMGS VGVVISTLLI KYKGWLVADP ASSIFISILI
701: IASVIPLLRN SAEILLQRVP RAHRQDLKEA MRNILKTKGV CSIQRLHVWS FTNSDVVATL HLLVSADSDK TDTKLQVSRL LEDAGVKDWT LQVESVNS

Arabidopsis Description

Metal tolerance protein 12 [Source:UniProtKB/TrEMBL;Acc:A0A0A8IL98]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.