Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_14s0066g02030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16070.1 | VIT_14s0066g02030.t01 | AT2G04620.1 | 16792696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g117730.2.1 | Tomato | cytosol | 70.82 | 65.76 |
| PGSC0003DMT400036862 | Potato | nucleus | 71.35 | 64.66 |
| KRH23693 | Soybean | plastid | 59.95 | 63.48 |
| GSMUA_Achr1P10180_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 54.91 | 56.4 |
| Bra026081.1-P | Field mustard | nucleus | 57.82 | 56.04 |
| CDY35067 | Canola | nucleus | 57.82 | 56.04 |
| AT1G16070.1 | Thale cress | nucleus | 58.89 | 55.92 |
| CDY69989 | Canola | nucleus | 57.82 | 55.61 |
| Zm00001d015485_P001 | Maize | plastid | 56.5 | 52.99 |
| HORVU6Hr1G029710.3 | Barley | plastid | 54.38 | 51.9 |
| TraesCS6B01G177300.1 | Wheat | plastid | 53.85 | 51.79 |
| KXG29622 | Sorghum | plastid | 56.76 | 50.47 |
| TraesCS6D01G138700.1 | Wheat | plastid | 48.54 | 46.92 |
| TraesCS6A01G149400.1 | Wheat | plastid | 48.28 | 45.5 |
| Os02t0179400-00 | Rice | nucleus | 37.4 | 34.14 |
| VIT_12s0028g00190.t01 | Wine grape | cytosol, extracellular, mitochondrion, plastid | 4.77 | 30.51 |
| VIT_01s0010g01060.t01 | Wine grape | mitochondrion | 4.24 | 29.63 |
| VIT_04s0023g01950.t01 | Wine grape | cytosol | 25.2 | 23.0 |
| VIT_05s0020g01930.t01 | Wine grape | cytosol | 20.69 | 22.29 |
| VIT_18s0072g00630.t01 | Wine grape | cytosol | 24.93 | 22.12 |
| VIT_12s0055g00460.t01 | Wine grape | mitochondrion | 24.67 | 21.93 |
| VIT_07s0104g01290.t01 | Wine grape | cytosol | 22.55 | 20.99 |
| VIT_18s0001g12660.t01 | Wine grape | cytosol | 22.81 | 20.67 |
| VIT_01s0010g01050.t01 | Wine grape | cytosol | 6.9 | 19.26 |
| VIT_19s0014g01250.t01 | Wine grape | mitochondrion | 19.36 | 18.2 |
| VIT_00s0426g00050.t01 | Wine grape | extracellular | 7.43 | 17.61 |
Protein Annotations
| EntrezGene:100248428 | wikigene:100248428 | MapMan:15.5.21 | Gene3D:3.20.90.10 | ProteinID:CBI25260 | ProteinID:CBI25260.3 |
| UniProt:D7T428 | EMBL:FN595513 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 | GO:GO:0035091 |
| InterPro:IPR025659 | EntrezGene:LOC100248428 | wikigene:LOC100248428 | PFAM:PF01167 | PRINTS:PR01573 | PANTHER:PTHR16517 |
| PANTHER:PTHR16517:SF27 | SUPFAM:SSF54518 | InterPro:Tubby-like_C | InterPro:Tubby_C | UniParc:UPI0001BE2761 | ArrayExpress:VIT_09s0018g01630 |
| EnsemblPlantsGene:VIT_09s0018g01630 | EnsemblPlants:VIT_09s0018g01630.t01 | RefSeq:XP_002272047 | RefSeq:XP_002272047.2 | : | : |
Description
No Description!
Coordinates
chr9:+:18883888..18888387
Molecular Weight (calculated)
42054.4 Da
IEP (calculated)
9.671
GRAVY (calculated)
-0.456
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGFKKSPYN SLYVNPLNDL KHIRSCSEGD KENAAPKAKE NGNAPPPTKQ FPYTKCSSTT TRVPLKPSSL QLCMQLNEPD STLGSKVWCP ISSEPFTSSH
101: VWDYSDSEAA PASSWSTLPN RSLLCRPLPL DIGRCTCVIV KEALPQGLDG GALYSLYTNE GQGRQDRKLA IAHHKRRNGK SEFIVAQSVK GILCNSDDSF
201: IGIVTANLLG SKYHIWDQGT CLNSVAKRSK PLLAVVTFMP TIATLTGSYR NIRAWIPKHQ SMQLKNSTQI QHINGLPNDW ESKKDKVHQL FSRVPHYNSV
301: SKQYELDFRE RGRAGLRIQS SVKNFQLTLE EKGKQTILQL GRVGKSKYVM DYRYPLTGYQ AFCICLASID SKLCCTV
101: VWDYSDSEAA PASSWSTLPN RSLLCRPLPL DIGRCTCVIV KEALPQGLDG GALYSLYTNE GQGRQDRKLA IAHHKRRNGK SEFIVAQSVK GILCNSDDSF
201: IGIVTANLLG SKYHIWDQGT CLNSVAKRSK PLLAVVTFMP TIATLTGSYR NIRAWIPKHQ SMQLKNSTQI QHINGLPNDW ESKKDKVHQL FSRVPHYNSV
301: SKQYELDFRE RGRAGLRIQS SVKNFQLTLE EKGKQTILQL GRVGKSKYVM DYRYPLTGYQ AFCICLASID SKLCCTV
001: MAGSRKVNDL LEENKGNVDT ITGSLSTQKG EDKENVSPEK VSTSVETRKL DRALKSQSMK GNSGFPTEVT NFKSFSTGGR TALKQSSLQA CMQKNSEVDK
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV
Arabidopsis Description
TULP8TLP8 [Source:UniProtKB/TrEMBL;Acc:A0A178WHW0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.