Factsheet for HORVU6Hr1G029710.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G025050.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16070.1	HORVU2Hr1G025050.1	AT2G04620.1	16792696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G177300.1	Wheat	plastid	94.94	95.66
TraesCS6D01G138700.1	Wheat	plastid	86.84	87.95
TraesCS6A01G149400.1	Wheat	plastid	87.59	86.5
Zm00001d015485_P001	Maize	plastid	76.46	75.12
KXG29622	Sorghum	plastid	80.0	74.53
VIT_09s0018g01630.t01	Wine grape	cytosol	51.9	54.38
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	49.87	53.68
Os02t0179400-00	Rice	nucleus	52.91	50.61
KRH23693	Soybean	plastid	45.06	50.0
Solyc03g117730.2.1	Tomato	cytosol	49.11	47.78
PGSC0003DMT400036862	Potato	nucleus	49.37	46.88
Bra026081.1-P	Field mustard	nucleus	45.32	46.02
CDY35067	Canola	nucleus	45.06	45.76
AT1G16070.1	Thale cress	nucleus	45.82	45.59
CDY69989	Canola	nucleus	45.06	45.41
HORVU5Hr1G023650.1	Barley	plastid	14.43	23.65
HORVU6Hr1G068970.3	Barley	cytosol	22.53	20.84
HORVU3Hr1G061930.1	Barley	cytosol	18.73	20.79
HORVU5Hr1G040000.2	Barley	cytosol	21.52	19.36
HORVU1Hr1G076900.1	Barley	cytosol	18.23	18.7
HORVU4Hr1G020110.3	Barley	cytosol, mitochondrion	20.51	18.41
HORVU1Hr1G074940.3	Barley	cytosol, mitochondrion, nucleus, plastid	20.25	17.7
HORVU3Hr1G083290.1	Barley	mitochondrion	19.75	17.37
HORVU2Hr1G124880.1	Barley	plastid	19.75	12.56
HORVU0Hr1G001350.2	Barley	cytosol	10.89	11.53

Protein Annotations

EnsemblPlants:HORVU6Hr1G029710.3	EnsemblPlantsGene:HORVU6Hr1G029710	Gene3D:3.20.90.10	InterPro:IPR025659	InterPro:Tubby-like_C	InterPro:Tubby_C
PANTHER:PTHR16517	PANTHER:PTHR16517:SF27	PFAM:PF01167	PRINTS:PR01573	SEG:seg	SUPFAM:SSF54518
UniParc:UPI000B474858	UniProt:A0A287TQZ2	MapMan:15.5.21	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:121775238..121778503

Molecular Weight (calculated)

43188.9 Da

IEP (calculated)

10.535

GRAVY (calculated)

-0.481

Length

395 amino acids

Sequence
(BLAST)

001: MAATPPKREP LAPLSCNAAA HTPPTAAAAR PRAPAVSAEK ENLGAANLGP GKEEKKAAPA AAKAPPLKPS SLQARMEGEE APLARATAAG MPVFVGPRGR
101: ELLPPPPPPP VSSSYEAWDL SDNEAAPAAS WATLPNRALL CRPLPLDVGR CTCVVVREKA TGARGVALYS LYTNEGQGRQ DRKLAVARHR RRRGRSEFIV
201: AQNQDGVFGS SDKNFLGTMG ANLVGSRYQI WGQGNRADEL KSQSKRLLGI IAFAPTIATL TGSFRSMRAW IPKNQSMQLR SNSSAQIQHV NGLPKDWQEK
301: RSRAEQLCSR SPFYNNMTKR YELDFRERVG RMGYKVQTSV KNFQMTLEEN GRQTILQLGR VGKSKYIMDF RYPLTGYQAF CICLASMDSK LCCTL

Best Arabidopsis Sequence Match ( AT1G16070.1 )
(BLAST)

001: MAGSRKVNDL LEENKGNVDT ITGSLSTQKG EDKENVSPEK VSTSVETRKL DRALKSQSMK GNSGFPTEVT NFKSFSTGGR TALKQSSLQA CMQKNSEVDK
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV

Arabidopsis Description

TULP8TLP8 [Source:UniProtKB/TrEMBL;Acc:A0A178WHW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.