Factsheet for HORVU5Hr1G040000.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G124100.1	Wheat	cytosol	94.76	94.76
TraesCS5B01G123800.1	Wheat	golgi	94.31	94.31
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	94.08	94.08
Os12t0163400-01	Rice	cytosol	88.38	87.19
KXG23034	Sorghum	cytosol, mitochondrion	83.14	83.52
HORVU4Hr1G020110.3	Barley	cytosol, mitochondrion	77.68	77.5
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	72.21	74.07
HORVU5Hr1G023650.1	Barley	plastid	39.41	71.78
HORVU1Hr1G074940.3	Barley	cytosol, mitochondrion, nucleus, plastid	71.3	69.25
HORVU3Hr1G083290.1	Barley	mitochondrion	67.65	66.15
GSMUA_Achr11P...	Banana	cytosol	54.21	57.35
HORVU6Hr1G068970.3	Barley	cytosol	52.39	53.86
HORVU3Hr1G061930.1	Barley	cytosol	40.32	49.72
HORVU1Hr1G076900.1	Barley	cytosol	40.77	46.49
HORVU2Hr1G124880.1	Barley	plastid	62.64	44.28
HORVU0Hr1G001350.2	Barley	cytosol	24.6	28.95
HORVU6Hr1G029710.3	Barley	plastid	19.36	21.52

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A287QWV6	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU5Hr1G040000	EnsemblPlants:HORVU5Hr1G040000.2	InterPro:IPR001810
InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201
PANTHER:PTHR16517	PANTHER:PTHR16517:SF43	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C
InterPro:Tubby_C_CS	UniParc:UPI000B474659	SEG:seg	:	:	:

Description

Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A287QWV6]

Coordinates

chrchr5H:-:292644564..292650756

Molecular Weight (calculated)

48976.4 Da

IEP (calculated)

9.527

GRAVY (calculated)

-0.362

Length

439 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDGFGSLSRR GFEVRFLGHR RGKSHSAVHE LQDPAPVTQS SCWANLPPEL LHDVIERLEA SEATWPSRKH VVACAAVCRT WRQMCQEIVK
101: NPEFCGKVTF PVSLKQPGPR DGAIQCFIKR DKSTQTYCLY LCLTSAVVIE NGKFLLLAKR YSRPTCTEYT IFMSADNTSR SSNMYIGKLR SNLLGTKFVI
201: YDTQLPCNIP NVSQSGKTSR RFYSRKVSPK ASSSTYSIAQ VSYELNVLGT RGPRRMNCVM NSIPASSLEA GGTVPCQPDN AVAHSLDESF GSISFSKSST
301: RDRSIRFSST RFSDISIGGS RNGGQALGDK DECKEWPLIL RNKAPRWHDQ LQCWCLNFKG RVTVASVKNF QLVAATQTTA EDRTSSQPAP PPPSEHDKVI
401: LQFGKVAKDM FTMDYRYPLS AFQAFAICLS SFDTKLACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.