Factsheet for HORVU4Hr1G020110.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G110100.1	Wheat	golgi	98.41	98.41
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	98.41	98.41
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	98.18	98.18
HORVU5Hr1G040000.2	Barley	cytosol	77.5	77.68
Zm00001d053179_P001	Maize	cytosol	78.18	76.79
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	72.95	75.0
EES08030	Sorghum	cytosol, mitochondrion	77.5	74.78
HORVU5Hr1G023650.1	Barley	plastid	40.0	73.03
HORVU1Hr1G074940.3	Barley	cytosol, mitochondrion, nucleus, plastid	72.05	70.13
HORVU3Hr1G083290.1	Barley	mitochondrion	68.41	67.04
GSMUA_Achr11P...	Banana	cytosol	55.68	59.04
HORVU6Hr1G068970.3	Barley	cytosol	52.95	54.57
HORVU3Hr1G061930.1	Barley	cytosol	40.68	50.28
HORVU1Hr1G076900.1	Barley	cytosol	39.32	44.94
HORVU2Hr1G124880.1	Barley	plastid	62.73	44.44
HORVU0Hr1G001350.2	Barley	cytosol	23.41	27.61
HORVU6Hr1G029710.3	Barley	plastid	18.41	20.51

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:HORVU4Hr1G020110	EnsemblPlants:HORVU4Hr1G020110.3	InterPro:IPR001810	InterPro:IPR025659	UniProt:M0UQC6
PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	PANTHER:PTHR16517	PANTHER:PTHR16517:SF43
SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI000294C351
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:97776397..97781833

Molecular Weight (calculated)

48715.6 Da

IEP (calculated)

9.610

GRAVY (calculated)

-0.241

Length

440 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDGFGSLSRR GFDIRILGHG RGRSHGAVHE LHDPVPVIQS SCWANLPSEL LRDVIERLEA SEATWPCRKN VVACAAVCRT WREMCKEIVK
101: NPEFCGKITF PVSLKQPGPR DGTMQCFIKR DRSTQTYYLY LCLTSAVLVE NGKFLLSAKR ICRATCTEYI ISMNANSISR STDTYIGKMR SNFLGTKFVM
201: YDTQPPYNAS SVSHSGTTSR RFYSKKGSAK VPCSTYSIAQ VSYELNVLGT RGPRRMRCVM HSIPASSLEA GGSVPCQPDI IFSRSLGESF SSMPVSKSSV
301: MDHSMRFSSA RFSDVSIGGG PAIRGQALSD GEDLKDTPLI LRNKVPRWHE QLQCWCLNFR GRVTVASVKN FQLTAAAHPA AGAPTPPQPA PAPPPEHDKV
401: ILQFGKVAKD MFTMDYRYPL SAFQAFALSL SSFDTKLACE

Best Arabidopsis Sequence Match ( AT1G43640.1 )
(BLAST)

001: MSFLSIVRDV RDTVGSFSRR SFDVRVSNGT THQRSKSHGV EAHIEDLIVI KNTRWANLPA ALLRDVMKKL DESESTWPAR KQVVACAGVC KTWRLMCKDI
101: VKSPEFSGKL TFPVSLKQPG PRDGIIQCYI KRDKSNMTYH LYLSLSPAIL VESGKFLLSA KRSRRATYTE YVISMDADNI SRSSSTYIGK LKSNFLGTKF
201: IVYDTAPAYN SSQILSPPNR SRSFNSKKVS PKVPSGSYNI AQVTYELNLL GTRGPRRMNC IMHSIPSLAL EPGGTVPSQP EFLQRSLDES FRSIGSSKIV
301: NHSGDFTRPK EEEGKVRPLV LKTKPPRWLQ PLRCWCLNFK GRVTVASVKN FQLMSAATVQ PGSGSDGGAL ATRPSLSPQQ PEQSNHDKII LHFGKVGKDM
401: FTMDYRYPLS AFQAFAISLS TFDTKLACE

Arabidopsis Description

TULP5Tubby-like F-box protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q944S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.