Factsheet for GSMUA_Achr11P12110_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P07950_001	Banana	mitochondrion	60.24	65.79
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	66.02	64.02
GSMUA_Achr8P32840_001	Banana	mitochondrion	63.13	63.75
GSMUA_Achr3P22480_001	Banana	cytosol	52.29	62.36
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	46.27	62.34
VIT_18s0072g00630.t01	Wine grape	cytosol	62.65	61.18
KRH10476	Soybean	cytosol, mitochondrion	62.17	60.42
KRH43964	Soybean	cytosol, mitochondrion	61.45	59.72
VIT_12s0055g00460.t01	Wine grape	mitochondrion	60.96	59.67
PGSC0003DMT400061933	Potato	cytosol	60.96	59.39
Solyc04g071440.2.1	Tomato	mitochondrion	60.96	59.39
PGSC0003DMT400076537	Potato	cytosol	60.72	59.02
Solyc01g104670.2.1	Tomato	cytosol	60.72	59.02
KRH70303	Soybean	cytosol	59.76	58.49
KRH08694	Soybean	mitochondrion	59.76	58.49
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	25.06	58.43
KRH35144	Soybean	cytosol, mitochondrion	59.28	57.21
KRG91652	Soybean	cytosol, mitochondrion	59.28	57.21
PGSC0003DMT400002858	Potato	mitochondrion	58.55	57.04
Solyc10g046970.1.1	Tomato	mitochondrion	58.31	56.81
GSMUA_Achr2P23080_001	Banana	cytosol	18.55	56.62
KXG23034	Sorghum	cytosol, mitochondrion	59.52	56.52
CDY13570	Canola	cytosol	57.59	56.24
Os12t0163400-01	Rice	cytosol	60.24	56.18
TraesCS4D01G110100.1	Wheat	golgi	59.52	56.14
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	59.28	55.91
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	59.28	55.91
CDY45959	Canola	cytosol	57.59	55.71
HORVU4Hr1G020110.3	Barley	cytosol, mitochondrion	59.04	55.68
CDX84977	Canola	cytosol	55.9	55.24
CDY36119	Canola	cytosol	55.42	54.5
TraesCS5A01G124100.1	Wheat	cytosol	57.59	54.44
TraesCS5B01G123800.1	Wheat	golgi	57.59	54.44
Bra040803.1-P	Field mustard	cytosol	58.55	54.36
HORVU5Hr1G040000.2	Barley	cytosol	57.35	54.21
CDY51990	Canola	cytosol	55.18	54.14
Zm00001d053179_P001	Maize	cytosol	58.31	54.02
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	57.11	53.99
CDY66464	Canola	cytosol	55.66	53.85
CDY65845	Canola	cytosol, mitochondrion	58.07	53.56
Bra024763.1-P	Field mustard	cytosol	56.39	53.42
CDX87562	Canola	cytosol, mitochondrion	57.83	53.22
CDY42119	Canola	cytosol	55.66	52.86
Bra010985.1-P	Field mustard	cytosol	55.42	52.39
CDY72036	Canola	cytosol	55.66	52.14
Bra012486.1-P	Field mustard	cytosol	55.66	52.14
AT1G76900.1	Thale cress	cytosol	57.11	52.09
EES08030	Sorghum	cytosol, mitochondrion	56.87	51.75
AT1G25280.1	Thale cress	cytosol	55.42	51.69
Bra015711.1-P	Field mustard	cytosol, mitochondrion	57.83	51.61
AT1G43640.1	Thale cress	cytosol	52.77	51.05
GSMUA_Achr3P17440_001	Banana	cytosol	48.92	50.37
GSMUA_Achr1P11290_001	Banana	cytosol	48.92	50.0
GSMUA_Achr7P25250_001	Banana	cytosol	38.07	49.69
GSMUA_Achr4P01150_001	Banana	cytosol	38.07	49.53
GSMUA_Achr6P09030_001	Banana	cytosol	42.65	48.9
GSMUA_Achr3P31460_001	Banana	cytosol	37.11	48.12
GSMUA_Achr2P22940_001	Banana	cytosol	41.45	46.87
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	30.6	43.05
GSMUA_Achr10P...	Banana	mitochondrion	38.31	42.97
GSMUA_Achr4P10540_001	Banana	mitochondrion	38.8	41.93
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	29.4	41.08
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	15.9	33.5
GSMUA_Achr10P...	Banana	nucleus	16.14	31.9
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	16.39	18.53

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr11G12110_001	EnsemblPlants:GSMUA_Achr11P12110_001	EnsemblPlants:GSMUA_Achr11T12110_001	InterPro:IPR001810
InterPro:IPR025659	UniProt:M0RRJ1	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	PANTHER:PTHR16517
PANTHER:PTHR16517:SF43	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	UniParc:UPI00029492A9

Description

Tubby-like F-box protein 14 [Source:GMGC_GENE;Acc:GSMUA_Achr11G12110_001]

Coordinates

chr11:-:10972608..10975865

Molecular Weight (calculated)

46922.1 Da

IEP (calculated)

8.439

GRAVY (calculated)

-0.243

Length

415 amino acids

Sequence
(BLAST)

001: MSFCNIFCNA RYSYGGSSRH DFETRLAGHC TPNSQVAVHE VHDQHLVVQA SCWDSFPPEL LNDVITRLDS ESTWPFCKNV VACAGVCRSW REICKEIVKN
101: PEFSGKFTFP VSLKQTGPRD STIQCFVKRD NRDKSSLTYH LYLCLSSDVL VENGKFLLSA KKIRRATCTE YIISMDRDNI TRSSNTYIGK VRSNFIETKF
201: EIYDTQPPCN GAASSQLGKI SQRPYLRKFS TKVPTGNFKI AQVTYEINVR RSRSPRRMHC VMHSIPASAL DAGGTVPFRV GNEEDDKATE MPLVLRNKAP
301: RWVEQLQCWC LDFGGRVTMA SVKNFQLIEA TQPAASHPSP LEQDKIILQF GKVAEDMFTM DYRYPLSAFQ AFAICLCSFS NWPCDAIIHG PIFFFALFVA
401: SVTASPRSNP IYLSH

Best Arabidopsis Sequence Match ( AT1G76900.2 )
(BLAST)

001: MSFRSIVRDV RDSIGSLSRR SFDFKLSSLN KEGGKSRGSV QDSHEEQLVV TIQETPWANL PPELLRDVIK RLEESESVWP ARRHVVACAS VCRSWRDMCK
101: EIVQSPELSG KITFPVSLKQ PGPRDATMQC FIKRDKSNLT YHLYLCLSPA LLVENGKFLL SAKRIRRTTY TEYVISMHAD TISRSSNTYI GKIRSNFLGT
201: KFIIYDTQPA YNSNIARAVQ PVGLSRRFYS KRVSPKVPSG SYKIAQVSYE LNVLGTRGPR RMHCAMNSIP ASSLAEGGTV PGQPDIIVPR SILDESFRSI
301: TSSSSRKITY DYSNDFSSAR FSDILGPLSE DQEVVLEEGK ERNSPPLVLK NKPPRWHEQL QCWCLNFRGR VTVASVKNFQ LIAANQPQPQ PQPQPQPQPL
401: TQPQPSGQTD GPDKIILQFG KVGKDMFTMD FRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP1Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WI43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.