Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_09s0018g01630.t01 | Wine grape | cytosol | 56.4 | 54.91 |
| TraesCS6B01G177300.1 | Wheat | plastid | 53.95 | 50.51 |
| HORVU6Hr1G029710.3 | Barley | plastid | 53.68 | 49.87 |
| Zm00001d015485_P001 | Maize | plastid | 54.5 | 49.75 |
| TraesCS6D01G138700.1 | Wheat | plastid | 52.32 | 49.23 |
| KRH23693 | Soybean | plastid | 46.59 | 48.03 |
| Solyc03g117730.2.1 | Tomato | cytosol | 53.13 | 48.03 |
| KXG29622 | Sorghum | plastid | 55.04 | 47.64 |
| TraesCS6A01G149400.1 | Wheat | plastid | 51.77 | 47.5 |
| PGSC0003DMT400036862 | Potato | nucleus | 52.32 | 46.15 |
| CDY35067 | Canola | nucleus | 46.59 | 43.96 |
| CDY69989 | Canola | nucleus | 46.87 | 43.88 |
| AT1G16070.1 | Thale cress | nucleus | 47.41 | 43.83 |
| Bra026081.1-P | Field mustard | nucleus | 46.32 | 43.7 |
| Os02t0179400-00 | Rice | nucleus | 41.96 | 37.29 |
| GSMUA_Achr2P23080_001 | Banana | cytosol | 8.45 | 22.79 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 10.9 | 22.47 |
| GSMUA_Achr7P13870_001 | Banana | mitochondrion, plastid | 17.17 | 21.36 |
| GSMUA_Achr7P25250_001 | Banana | cytosol | 17.98 | 20.75 |
| GSMUA_Achr3P31460_001 | Banana | cytosol | 17.71 | 20.31 |
| GSMUA_Achr6P09030_001 | Banana | cytosol | 19.89 | 20.17 |
| GSMUA_Achr8P07950_001 | Banana | mitochondrion | 20.44 | 19.74 |
| GSMUA_Achr9P08860_001 | Banana | cytosol, mitochondrion | 22.89 | 19.63 |
| GSMUA_Achr4P01150_001 | Banana | cytosol | 16.62 | 19.12 |
| GSMUA_Achr2P22940_001 | Banana | cytosol | 18.8 | 18.8 |
| GSMUA_Achr8P32840_001 | Banana | mitochondrion | 20.71 | 18.49 |
| GSMUA_Achr3P17440_001 | Banana | cytosol | 19.89 | 18.11 |
| GSMUA_Achr1P11290_001 | Banana | cytosol | 19.89 | 17.98 |
| GSMUA_Achr10P... | Banana | mitochondrion | 17.17 | 17.03 |
| GSMUA_Achr3P22480_001 | Banana | cytosol | 16.08 | 16.95 |
| GSMUA_Achr4P10540_001 | Banana | mitochondrion | 17.71 | 16.93 |
| GSMUA_Achr11P... | Banana | cytosol | 18.53 | 16.39 |
| GSMUA_Achr9P29600_001 | Banana | cytosol, mitochondrion | 13.62 | 16.23 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 10.08 | 12.46 |
| GSMUA_Achr2P23070_001 | Banana | cytosol, mitochondrion | 6.54 | 12.18 |
| GSMUA_Achr10P... | Banana | nucleus | 5.99 | 10.48 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P10180_001 | EnsemblPlants:GSMUA_Achr1T10180_001 | EnsemblPlantsGene:GSMUA_Achr1G10180_001 | Gene3D:3.20.90.10 | InterPro:IPR025659 | InterPro:Tubby-like_C |
| InterPro:Tubby_C | PANTHER:PTHR16517 | PANTHER:PTHR16517:SF27 | PFAM:PF01167 | PRINTS:PR01573 | SEG:seg |
| SUPFAM:SSF54518 | UniParc:UPI0002954ADA | UniProt:M0RYM7 | MapMan:15.5.21 | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_18.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr1G10180_001]
Coordinates
chr1:+:7691111..7693200
Molecular Weight (calculated)
41608.8 Da
IEP (calculated)
10.531
GRAVY (calculated)
-0.639
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAVPKKPHP LPSSHHRNSA SPHQSRCQDP LLDPDKENLV PVVSLNACKG KKLDVKPALR PSSLQLCMKL NEPPQPSSSS SSLLGPPKPW EPLSSSSDVW
101: DQFSDSESAP ASSWSTLPNR SLLYRPLPLD VGRCTCIIFK ERTQGRSGMS FYTLYTNEGQ GRQDRKLAVA WHRRRNGRSE FIVAQNPNGI FCNSDESFLG
201: SITANLMGSK YQIWDQVGNR FDPRKKHSRH LLGLVVYLPT VTTITGNYRS LRAWIPKYQS MQLKNSNTTQ IQHINGLPKD WGENSNRANR LVSRVPYYNT
301: FTKRHELDFR ERAGRTGPII QSSVKNFQLT MEEKGKQTIL QLGKIGKSKY VMDYRQVVIP LFKAFIL
101: DQFSDSESAP ASSWSTLPNR SLLYRPLPLD VGRCTCIIFK ERTQGRSGMS FYTLYTNEGQ GRQDRKLAVA WHRRRNGRSE FIVAQNPNGI FCNSDESFLG
201: SITANLMGSK YQIWDQVGNR FDPRKKHSRH LLGLVVYLPT VTTITGNYRS LRAWIPKYQS MQLKNSNTTQ IQHINGLPKD WGENSNRANR LVSRVPYYNT
301: FTKRHELDFR ERAGRTGPII QSSVKNFQLT MEEKGKQTIL QLGKIGKSKY VMDYRQVVIP LFKAFIL
001: MAGSRKVNDL LEENKGNVDT ITGSLSTQKG EDKENVSPEK VSTSVETRKL DRALKSQSMK GNSGFPTEVT NFKSFSTGGR TALKQSSLQA CMQKNSEVDK
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV
Arabidopsis Description
TULP8TLP8 [Source:UniProtKB/TrEMBL;Acc:A0A178WHW0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.