Factsheet for GSMUA_Achr4P10540_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P31460_001	Banana	cytosol	70.83	85.0
GSMUA_Achr7P25250_001	Banana	cytosol	69.01	83.33
GSMUA_Achr4P01150_001	Banana	cytosol	65.62	79.0
GSMUA_Achr10P...	Banana	mitochondrion	69.79	72.43
CDY02510	Canola	cytosol	59.38	71.03
TraesCS3B01G304600.1	Wheat	cytosol	64.06	70.09
CDY25719	Canola	cytosol	59.64	69.39
TraesCS3D01G270500.1	Wheat	cytosol	64.06	69.3
HORVU3Hr1G061930.1	Barley	cytosol	64.06	69.1
Os01t0674500-01	Rice	cytosol	64.06	69.1
TraesCS3A01G270800.1	Wheat	cytosol	63.8	69.01
Zm00001d011578_P003	Maize	nucleus	63.28	67.88
EES03425	Sorghum	plastid	63.02	67.22
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	51.56	67.12
Os05t0560400-00	Rice	cytosol	61.46	67.05
Os05t0514300-01	Rice	mitochondrion	64.32	66.4
Zm00001d038691_P001	Maize	mitochondrion	61.98	64.85
KRH27356	Soybean	mitochondrion	63.8	64.81
KRH21960	Soybean	mitochondrion	63.8	64.3
EES18499	Sorghum	mitochondrion	62.24	64.25
TraesCS1A01G333900.1	Wheat	mitochondrion	61.72	63.54
TraesCS1B01G347200.1	Wheat	mitochondrion	61.46	63.27
AT1G53320.1	Thale cress	mitochondrion	61.98	62.8
TraesCS1D01G336400.1	Wheat	mitochondrion	61.46	62.77
CDY45927	Canola	cytosol, plastid	60.94	62.4
CDY25863	Canola	cytosol, mitochondrion	61.2	62.33
Bra041095.1-P	Field mustard	cytosol, mitochondrion	61.2	62.33
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	28.39	61.24
Bra030942.1-P	Field mustard	mitochondrion	61.98	60.71
PGSC0003DMT400018209	Potato	mitochondrion	60.94	60.62
Solyc07g062390.2.1	Tomato	mitochondrion	60.94	60.62
Zm00001d043895_P003	Maize	cytosol	59.38	60.32
VIT_19s0014g01250.t01	Wine grape	mitochondrion	61.98	59.35
HORVU1Hr1G076900.1	Barley	cytosol	58.59	58.44
OQU78419	Sorghum	cytosol	56.25	57.29
Os01t0759100-01	Rice	cytosol, plastid	53.65	55.98
GSMUA_Achr2P23080_001	Banana	cytosol	19.27	54.41
GSMUA_Achr8P07950_001	Banana	mitochondrion	48.44	48.95
GSMUA_Achr6P09030_001	Banana	cytosol	46.09	48.9
GSMUA_Achr1P11290_001	Banana	cytosol	50.0	47.29
GSMUA_Achr2P22940_001	Banana	cytosol	44.53	46.59
GSMUA_Achr3P17440_001	Banana	cytosol	48.7	46.4
GSMUA_Achr8P32840_001	Banana	mitochondrion	48.18	45.01
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	35.94	44.81
GSMUA_Achr3P22480_001	Banana	cytosol	40.36	44.54
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	47.14	42.29
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	30.21	39.06
GSMUA_Achr11P...	Banana	cytosol	41.93	38.8
HORVU0Hr1G001350.2	Barley	cytosol	33.07	34.05
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	16.15	31.47
GSMUA_Achr10P...	Banana	nucleus	15.36	28.1
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	16.93	17.71

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr4G10540_001	EnsemblPlants:GSMUA_Achr4P10540_001	EnsemblPlants:GSMUA_Achr4T10540_001	InterPro:IPR001810	InterPro:IPR025659	UniProt:M0SMS1
PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517
PANTHER:PTHR16517:SF50	SUPFAM:SSF54518	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI000295B323
SEG:seg	:	:	:	:	:

Description

Tubby-like F-box protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G10540_001]

Coordinates

chr4:+:7659495..7662967

Molecular Weight (calculated)

42540.7 Da

IEP (calculated)

9.272

GRAVY (calculated)

-0.405

Length

384 amino acids

Sequence
(BLAST)

001: MALGKALLSR VPSSSAGWQR RDNEAGGVGG RAEDEEDIEE GGRDGASTAA ASGQEEEQER WASILPELLR EIVRRVEAGG ERWPMRKDVV SCACVCRSWR
101: EVTKGVVRPP LETGKITFPS SLKQPGPADT PIQCFIKRNK MSSTFYLYLS LTQTFMDKGK FLLAARRFRR GARIGYIISL NADDLSQGSN AYMGKLRSDF
201: LGTNFTIYDS RPPYDGAKAS SSRASRRFAS KQISPQVSAG NFEIGRLSYK FNLLKSRGPR RMCCSLHHPV VVQDSSEEDL LKSKAHGPGM SLVLQNKAPR
301: WHEHLQCWCL NFHGRVTVAS VKNFQLVATA DSNRPGGIGD EEVVLLQFGK VGDDMFTMDY RQPLSAFQAF AICLTSFGTK FACE

Best Arabidopsis Sequence Match ( AT1G53320.1 )
(BLAST)

001: MPLSRSLLSR RISNSFRFHQ GETTTAPESE SIPPPSNMAG SSSWSAMLPE LLGEIIRRVE ETEDRWPQRR DVVTCACVSK KWREITHDFA RSSLNSGKIT
101: FPSCLKLPGP RDFSNQCLIK RNKKTSTFYL YLALTPSFTD KGKFLLAARR FRTGAYTEYI ISLDADDFSQ GSNAYVGKLR SDFLGTNFTV YDSQPPHNGA
201: KPSNGKASRR FASKQISPQV PAGNFEVGHV SYKFNLLKSR GPRRMVSTLR CPSPSPSSSS AGLSSDQKPC DVTKIMKKPN KDGSSLTILK NKAPRWHEHL
301: QCWCLNFHGR VTVASVKNFQ LVATVDQSQP SGKGDEETVL LQFGKVGDDT FTMDYRQPLS AFQAFAICLT SFGTKLACE

Arabidopsis Description

TULP7Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WNG9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.