Factsheet for GSMUA_Achr8P07950_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P22480_001	Banana	cytosol	79.47	86.78
GSMUA_Achr8P32840_001	Banana	mitochondrion	86.58	80.05
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	63.68	78.57
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	78.95	70.09
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	32.11	68.54
GSMUA_Achr2P23080_001	Banana	cytosol	21.58	60.29
GSMUA_Achr11P...	Banana	cytosol	65.79	60.24
GSMUA_Achr6P09030_001	Banana	cytosol	55.0	57.73
GSMUA_Achr1P11290_001	Banana	cytosol	61.58	57.64
GSMUA_Achr7P25250_001	Banana	cytosol	47.89	57.23
GSMUA_Achr4P01150_001	Banana	cytosol	47.37	56.43
GSMUA_Achr3P31460_001	Banana	cytosol	47.37	56.25
GSMUA_Achr3P17440_001	Banana	cytosol	59.21	55.83
GSMUA_Achr2P22940_001	Banana	cytosol	49.74	51.5
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	38.95	50.17
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	39.21	50.17
GSMUA_Achr10P...	Banana	mitochondrion	47.89	49.19
GSMUA_Achr4P10540_001	Banana	mitochondrion	48.95	48.44
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	22.37	43.15
GSMUA_Achr10P...	Banana	nucleus	21.05	38.1
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	19.74	20.44

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr8G07950_001	EnsemblPlants:GSMUA_Achr8P07950_001	EnsemblPlants:GSMUA_Achr8T07950_001	InterPro:IPR001810
InterPro:IPR025659	UniProt:M0TNJ8	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200
ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF45	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI000294EAF0	SEG:seg	:	:

Description

Tubby-like F-box protein 13 [Source:GMGC_GENE;Acc:GSMUA_Achr8G07950_001]

Coordinates

chr8:+:5297371..5301473

Molecular Weight (calculated)

42769.0 Da

IEP (calculated)

10.513

GRAVY (calculated)

-0.285

Length

380 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDGFGSLSRR SFDVRLSGLI GHRRGKSQGS VQELHNPYPV VQQSRWASLP PELLRDVIKR LEASESTWPS RRDVVACAAV CRCWREMCKE
101: IVRSPEFGGK LTFPISLKQP GPRDGTIQCF IKRDKSKLTY HLYLCLSPSV LAETGKFLLS AKRNRRTTCT EYIISMDVDN ISRSSNTYIG KLRSNFLGTK
201: FVIYDTQPPY SGAALCPPGR TSRRFSKKVS PKVPSGSYSI AQIKYELNVL GTRGPRRMHC VMYSIPTSAI EPGGRIKERP LVLRNKAPRW HEQLQCWCLN
301: FRGRVTIASV KNFQLISAIQ PAAGAPMLSE PAAPSEHDKV ILQFGKVAKD MFTMDFRYPL SAFQAFAICL TSFGTKLACE

Best Arabidopsis Sequence Match ( AT1G43640.1 )
(BLAST)

001: MSFLSIVRDV RDTVGSFSRR SFDVRVSNGT THQRSKSHGV EAHIEDLIVI KNTRWANLPA ALLRDVMKKL DESESTWPAR KQVVACAGVC KTWRLMCKDI
101: VKSPEFSGKL TFPVSLKQPG PRDGIIQCYI KRDKSNMTYH LYLSLSPAIL VESGKFLLSA KRSRRATYTE YVISMDADNI SRSSSTYIGK LKSNFLGTKF
201: IVYDTAPAYN SSQILSPPNR SRSFNSKKVS PKVPSGSYNI AQVTYELNLL GTRGPRRMNC IMHSIPSLAL EPGGTVPSQP EFLQRSLDES FRSIGSSKIV
301: NHSGDFTRPK EEEGKVRPLV LKTKPPRWLQ PLRCWCLNFK GRVTVASVKN FQLMSAATVQ PGSGSDGGAL ATRPSLSPQQ PEQSNHDKII LHFGKVGKDM
401: FTMDYRYPLS AFQAFAISLS TFDTKLACE

Arabidopsis Description

TULP5Tubby-like F-box protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q944S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.