Factsheet for GSMUA_Achr2P23070_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	79.7	74.76
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	74.62	49.49
GSMUA_Achr6P09030_001	Banana	cytosol	49.75	27.07
Zm00001d033948_P004	Maize	cytosol	24.37	26.52
GSMUA_Achr2P22940_001	Banana	cytosol	47.72	25.61
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	38.07	24.35
TraesCS6B01G300200.1	Wheat	cytosol	52.28	24.18
Os02t0705300-01	Rice	cytosol	52.28	24.07
TraesCS6A01G272800.1	Wheat	cytosol	52.28	24.01
TraesCS6D01G252800.1	Wheat	cytosol	51.78	24.0
EES07397	Sorghum	cytosol	52.28	23.79
HORVU6Hr1G068970.3	Barley	cytosol	50.76	23.42
Zm00001d051568_P001	Maize	cytosol	50.76	22.94
VIT_04s0023g01950.t01	Wine grape	cytosol	47.72	22.76
GSMUA_Achr3P22480_001	Banana	cytosol	40.1	22.7
Zm00001d017773_P001	Maize	cytosol	50.25	22.65
VIT_18s0001g12660.t01	Wine grape	cytosol	47.72	22.6
GSMUA_Achr8P07950_001	Banana	mitochondrion	43.15	22.37
KRH28692	Soybean	cytosol	46.19	21.98
KRH76777	Soybean	cytosol	46.19	21.93
KRH69894	Soybean	cytosol	45.69	21.74
KRH08239	Soybean	cytosol	44.67	21.26
Solyc02g062670.2.1	Tomato	cytosol	43.65	20.92
PGSC0003DMT400040088	Potato	cytosol	43.15	20.73
Solyc02g085130.2.1	Tomato	cytosol	43.15	20.68
KRH15179	Soybean	cytosol	44.16	20.57
PGSC0003DMT400009280	Potato	cytosol	42.13	20.39
Solyc04g071750.2.1	Tomato	cytosol	40.61	20.0
PGSC0003DMT400058090	Potato	cytosol	41.12	19.95
Solyc03g033980.2.1	Tomato	cytosol	41.12	19.95
CDY46301	Canola	cytosol	38.07	19.84
Bra039620.1-P	Field mustard	cytosol	38.07	19.84
CDY65687	Canola	cytosol, mitochondrion	37.56	19.79
GSMUA_Achr8P32840_001	Banana	mitochondrion	41.12	19.71
PGSC0003DMT400016310	Potato	cytosol	40.1	19.7
CDY25159	Canola	cytosol	37.06	19.47
KRH05837	Soybean	mitochondrion	44.16	19.16
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	41.12	18.93
AT2G18280.2	Thale cress	cytosol	37.56	18.78
CDY17028	Canola	mitochondrion, nucleus	37.56	18.73
Bra040862.1-P	Field mustard	mitochondrion, nucleus	37.56	18.69
AT1G47270.1	Thale cress	nucleus	38.58	18.4
Bra015624.1-P	Field mustard	cytosol, mitochondrion	37.56	18.36
GSMUA_Achr1P11290_001	Banana	cytosol	37.56	18.23
GSMUA_Achr3P17440_001	Banana	cytosol	37.06	18.11
GSMUA_Achr10P...	Banana	mitochondrion	31.47	16.76
GSMUA_Achr4P10540_001	Banana	mitochondrion	31.47	16.15
GSMUA_Achr11P...	Banana	cytosol	33.5	15.9
GSMUA_Achr3P31460_001	Banana	cytosol	25.38	15.62
GSMUA_Achr7P25250_001	Banana	cytosol	24.87	15.41
GSMUA_Achr4P01150_001	Banana	cytosol	24.87	15.36
CDY06747	Canola	cytosol, mitochondrion	37.06	12.63
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	14.72	9.83
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	12.18	6.54
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	5.58	6.18
GSMUA_Achr2P23080_001	Banana	cytosol	3.05	4.41
CDY10578	Canola	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr2G23070_001	EnsemblPlants:GSMUA_Achr2P23070_001	EnsemblPlants:GSMUA_Achr2T23070_001	InterPro:IPR001810
InterPro:IPR025659	UniProt:M0SAE8	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	PANTHER:PTHR16517
PANTHER:PTHR16517:SF75	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	UniParc:UPI0002948E40
SEG:seg	:	:	:	:	:

Description

Tubby-like F-box protein 5 [Source:GMGC_GENE;Acc:GSMUA_Achr2G23070_001]

Coordinates

chr2:+:21904612..21905772

Molecular Weight (calculated)

22083.5 Da

IEP (calculated)

9.831

GRAVY (calculated)

-0.405

Length

197 amino acids

Sequence
(BLAST)

001: MSFKSLVREL RDGIGSMSRR GGGAMEGMMT AHSRGCAPHP QELEEQQQQG RWANLPPELL LDVIQRVEAS EVAWPERRHV LACAAVCRSW RNITKEVVRS
101: PEQCGQITFP FSLKQPGPRD HPIQCFIRRE RATSTFCLYL GLTPSLQGQS DKLLLAAHKI RRATSTNFVI SLNPEDFSRA SSTYIGKARQ VFSSTSL

Best Arabidopsis Sequence Match ( AT1G76900.1 )
(BLAST)

001: MSFRSIVRDV RDSIGSLSRR SFDFKLSSLN KEGGKSRGSV QDSHEEQLVV TIQETPWANL PPELLRDVIK RLEESESVWP ARRHVVACAS VCRSWRDMCK
101: EIVQSPELSG KITFPVSLKQ PGPRDATMQC FIKRDKSNLT YHLYLCLSPA LLVENGKFLL SAKRIRRTTY TEYVISMHAD TISRSSNTYI GKIRSNFLGT
201: KFIIYDTQPA YNSNIARAVQ PVGLSRRFYS KRVSPKVPSG SYKIAQVSYE LNVLGTRGPR RMHCAMNSIP ASSLAEGGTV PGQPDIIVPR SILDESFRSI
301: TSSSSRKITY DYSNDFSSAR FSDILGPLSE DQEVVLEEGK ERNSPPLVLK NKPPRWHEQL QCWCLNFRGR VTVASVKNFQ LIAANQPQPQ PQPQPQPQPL
401: TQPQPSGQTD GPDKIILQFG KVGKDMFTMD FRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP1Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WI43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.