Factsheet for GSMUA_Achr2P22940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P09030_001	Banana	cytosol	72.48	73.48
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	35.42	73.03
GSMUA_Achr2P23080_001	Banana	cytosol	26.43	71.32
VIT_04s0023g01950.t01	Wine grape	cytosol	67.03	59.56
TraesCS6D01G252800.1	Wheat	cytosol	68.39	59.06
TraesCS6B01G300200.1	Wheat	cytosol	68.39	58.92
HORVU6Hr1G068970.3	Barley	cytosol	68.12	58.55
Os02t0705300-01	Rice	cytosol	68.12	58.41
TraesCS6A01G272800.1	Wheat	cytosol	68.12	58.28
PGSC0003DMT400009280	Potato	cytosol	64.58	58.23
VIT_18s0001g12660.t01	Wine grape	cytosol	65.94	58.17
Solyc02g085130.2.1	Tomato	cytosol	65.12	58.15
EES07397	Sorghum	cytosol	67.85	57.51
KRH28692	Soybean	cytosol	64.58	57.25
CDY10578	Canola	mitochondrion	6.54	57.14
Zm00001d051568_P001	Maize	cytosol	67.85	57.11
Solyc04g071750.2.1	Tomato	cytosol	62.13	57.0
KRH76777	Soybean	cytosol	64.31	56.87
Solyc03g033980.2.1	Tomato	cytosol	62.4	56.4
PGSC0003DMT400058090	Potato	cytosol	62.4	56.4
Zm00001d017773_P001	Maize	cytosol	67.03	56.29
PGSC0003DMT400016310	Potato	cytosol	61.31	56.11
KRH69894	Soybean	cytosol	63.22	56.04
CDY25159	Canola	cytosol	57.22	56.0
KRH15179	Soybean	cytosol	64.03	55.56
KRH08239	Soybean	cytosol	62.67	55.56
CDY46301	Canola	cytosol	56.95	55.29
Bra039620.1-P	Field mustard	cytosol	56.95	55.29
Solyc02g062670.2.1	Tomato	cytosol	61.58	54.99
PGSC0003DMT400040088	Potato	cytosol	61.04	54.63
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	42.78	52.86
AT2G18280.2	Thale cress	cytosol	56.4	52.54
GSMUA_Achr7P25250_001	Banana	cytosol	45.5	52.52
GSMUA_Achr4P01150_001	Banana	cytosol	45.5	52.35
KRH05837	Soybean	mitochondrion	63.76	51.54
Bra015624.1-P	Field mustard	cytosol, mitochondrion	55.59	50.62
CDY65687	Canola	cytosol, mitochondrion	51.23	50.27
CDY17028	Canola	mitochondrion, nucleus	53.95	50.13
Bra040862.1-P	Field mustard	mitochondrion, nucleus	53.68	49.75
GSMUA_Achr8P07950_001	Banana	mitochondrion	51.5	49.74
GSMUA_Achr3P31460_001	Banana	cytosol	43.32	49.69
AT1G47270.1	Thale cress	nucleus	55.59	49.39
GSMUA_Achr1P11290_001	Banana	cytosol	53.13	48.03
GSMUA_Achr3P17440_001	Banana	cytosol	52.59	47.89
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	25.61	47.72
GSMUA_Achr3P22480_001	Banana	cytosol	44.69	47.13
GSMUA_Achr10P...	Banana	mitochondrion	46.87	46.49
GSMUA_Achr8P32840_001	Banana	mitochondrion	52.04	46.47
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	37.06	46.1
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	52.86	45.33
GSMUA_Achr4P10540_001	Banana	mitochondrion	46.59	44.53
GSMUA_Achr10P...	Banana	nucleus	25.34	44.29
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	36.51	43.51
GSMUA_Achr11P...	Banana	cytosol	46.87	41.45
CDY06747	Canola	cytosol, mitochondrion	53.95	34.26
Zm00001d033948_P004	Maize	cytosol	16.35	33.15
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	18.8	18.8

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr2G22940_001	EnsemblPlants:GSMUA_Achr2P22940_001	EnsemblPlants:GSMUA_Achr2T22940_001	InterPro:IPR001810	InterPro:IPR025659
UniProt:M0SAD5	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	PANTHER:PTHR16517
PANTHER:PTHR16517:SF75	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
UniParc:UPI0002952594	SEG:seg	:	:	:	:

Description

Tubby-like F-box protein 5 [Source:GMGC_GENE;Acc:GSMUA_Achr2G22940_001]

Coordinates

chr2:-:21837163..21838962

Molecular Weight (calculated)

40432.5 Da

IEP (calculated)

9.902

GRAVY (calculated)

-0.363

Length

367 amino acids

Sequence
(BLAST)

001: MPLKSLVREL KEMPDGIGGG GEGEGEGGGG AITMGHGREG APEGRWVNLP PELLFDVIRR VEASEVSWPA RRHVLACAAV CRWWRGITKE VVKSPEQCGR
101: ITFPLSLKQP GPRDHPIQCF MRRERTTSTF RVYLGLTPSL QSQKDKLLLA ARKTRRATST DFVISLASDN FSRASNAYIG RVRQCPHDAP VSSSSIPSNP
201: RAPSKQVSPR LPAGNYDVAT VSYEFNVLRT RGPRRIQCTM HSIPASSLRE GRGAAKDEES ARGFPSDGPT GSVPLILKNK SPRWHEQLQC WCLDFKGRVT
301: VASVKNFQLV AAVDPSFGVS LAEQEKVILQ FGKIGKDIFT MDYRYPLSAF QAFAICLTTF DTKPACE

Best Arabidopsis Sequence Match ( AT1G47270.1 )
(BLAST)

001: MDLSLLLPKR SWEISGGADK ISRVAMSLKN IVKNKYKAIG RRGRSHIAPE GSSVSSSLST NEGLNQSIWV DLPPELLLDI IQRIESEQSL WPGRRDVVAC
101: ASVCKSWREM TKEVVKVPEL SGLITFPISL RQPGPRDAPI QCFIKRERAT GIYRLYLGLS PALSGDKSKL LLSAKRVRRA TGAEFVVSLS GNDFSRSSSN
201: YIGKLRSNFL GTKFTVYENQ PPPFNRKLPP SMQVSPWVSS SSSSYNIASI LYELNVLRTR GPRRMQCIMH SIPISAIQEG GKIQSPTEFT NQGKKKKKPL
301: MDFCSGNLGG ESVIKEPLIL KNKSPRWHEQ LQCWCLNFKG RVTVASVKNF QLVAAAAEAG KNMNIPEEEQ DRVILQFGKI GKDIFTMDYR YPISAFQAFA
401: ICLSSFDTKP VCE

Arabidopsis Description

TULP6Tubby-like F-box protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.