Factsheet for PGSC0003DMT400058090

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g033980.2.1	Tomato	cytosol	97.78	97.78
PGSC0003DMT400016310	Potato	cytosol	92.86	94.02
PGSC0003DMT400040088	Potato	cytosol	81.53	80.73
PGSC0003DMT400009280	Potato	cytosol	80.79	80.59
VIT_04s0023g01950.t01	Wine grape	cytosol	78.82	77.48
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	33.0	75.28
GSMUA_Achr2P23080_001	Banana	cytosol	24.88	74.26
KRH76777	Soybean	cytosol	75.62	73.98
KRH28692	Soybean	cytosol	74.63	73.19
KRH69894	Soybean	cytosol	74.14	72.71
KRH08239	Soybean	cytosol	73.15	71.74
GSMUA_Achr6P09030_001	Banana	cytosol	61.58	69.06
CDY25159	Canola	cytosol	61.33	66.4
CDY46301	Canola	cytosol	61.58	66.14
Bra039620.1-P	Field mustard	cytosol	61.58	66.14
TraesCS6B01G300200.1	Wheat	cytosol	67.24	64.08
TraesCS6D01G252800.1	Wheat	cytosol	67.0	64.0
AT2G18280.2	Thale cress	cytosol	62.07	63.96
TraesCS6A01G272800.1	Wheat	cytosol	67.24	63.64
HORVU6Hr1G068970.3	Barley	cytosol	66.75	63.47
GSMUA_Achr2P22940_001	Banana	cytosol	56.4	62.4
Zm00001d051568_P001	Maize	cytosol	67.0	62.39
EES07397	Sorghum	cytosol	66.5	62.36
Zm00001d017773_P001	Maize	cytosol	67.0	62.24
CDY65687	Canola	cytosol, mitochondrion	54.68	59.36
Bra040862.1-P	Field mustard	mitochondrion, nucleus	56.9	58.33
CDY17028	Canola	mitochondrion, nucleus	56.4	57.97
Bra015624.1-P	Field mustard	cytosol, mitochondrion	57.14	57.57
AT1G47270.1	Thale cress	nucleus	57.39	56.42
CDY10578	Canola	mitochondrion	5.67	54.76
PGSC0003DMT400002858	Potato	mitochondrion	56.65	53.99
PGSC0003DMT400029513	Potato	cytosol	52.22	53.54
PGSC0003DMT400076537	Potato	cytosol	55.66	52.93
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	38.67	52.86
PGSC0003DMT400061933	Potato	cytosol	53.94	51.41
PGSC0003DMT400027634	Potato	cytosol	49.01	51.29
PGSC0003DMT400018209	Potato	mitochondrion	45.81	48.19
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	19.95	41.12
GSMUA_Achr10P...	Banana	nucleus	20.94	40.48
CDY06747	Canola	cytosol, mitochondrion	54.19	38.06
Zm00001d033948_P004	Maize	cytosol	15.02	33.7
PGSC0003DMT400036862	Potato	nucleus	21.18	20.67

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	UniProt:M1C232	PFAM:PF00646	PFAM:PF01167
EnsemblPlantsGene:PGSC0003DMG400022549	PGSC:PGSC0003DMG400022549	EnsemblPlants:PGSC0003DMT400058090	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201
PANTHER:PTHR16517	PANTHER:PTHR16517:SF74	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C
InterPro:Tubby_C_CS	UniParc:UPI000294C4B6	:	:	:	:

Description

Phosphoric diester hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400022549]

Coordinates

chr3:+:4231153..4234924

Molecular Weight (calculated)

45616.6 Da

IEP (calculated)

9.850

GRAVY (calculated)

-0.344

Length

406 amino acids

Sequence
(BLAST)

001: MSFKSIVREL KEMKDGIGSI SRRGEVEGRH WRNRTRTHIA PDVVPFDPNQ QGQWANIPPE LLLDIVRRVE ESETSFPART AVVFCASVCK SWREVTKEIV
101: KTPEECGRLT FPISLKQPGP RESPIHCFIK RNRANSVYRL YFGLTPSEDE SDKLLLAAKR IRRATSTDFV ISLVSDDFSR ASSTYVGKLR SNFLGTKFTI
201: YDNQLPSDAA IQHRGRLSRR FSTKQVSPTV SACNYSIATV SYELNVLRTR GPRRMHCAMH SIPFSSIQEG GSAPTPTSFP QYFNEKSSPA LVPRAKEPSV
301: NSSLTVSVPS REPLVLKNKA PRWHEQLQCW CLNFKGRVTV ASVKNFQLVA AVDPSHNIPA AVQETTILQF GKIGKDIFTM DYCYPLSAFQ AFAICLSSFD
401: TKPACE

Best Arabidopsis Sequence Match ( AT2G18280.2 )
(BLAST)

001: MSLKSILRDL KEVRDGLGGI SKRSWSKSSH IAPDQTTPPL DNIPQSPWAS LPPELLHDII WRVEESETAW PARAAVVSCA SVCKSWRGIT MEIVRIPEQC
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG

Arabidopsis Description

TULP2Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B9DGB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.