Factsheet for PGSC0003DMT400036862

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400017877

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16070.1	PGSC0003DMT400017877	AT2G04620.1	16792696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g117730.2.1	Tomato	cytosol	94.23	96.55
VIT_09s0018g01630.t01	Wine grape	cytosol	64.66	71.35
KRH23693	Soybean	plastid	50.48	58.99
AT1G16070.1	Thale cress	nucleus	50.48	52.9
Bra026081.1-P	Field mustard	nucleus	49.04	52.44
CDY35067	Canola	nucleus	49.04	52.44
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	46.15	52.32
CDY69989	Canola	nucleus	49.04	52.04
HORVU6Hr1G029710.3	Barley	plastid	46.88	49.37
Zm00001d015485_P001	Maize	plastid	47.6	49.25
TraesCS6B01G177300.1	Wheat	plastid	46.39	49.23
KXG29622	Sorghum	plastid	47.84	46.93
TraesCS6D01G138700.1	Wheat	plastid	40.87	43.59
TraesCS6A01G149400.1	Wheat	plastid	41.11	42.75
Os02t0179400-00	Rice	nucleus	30.77	30.99
PGSC0003DMT400061933	Potato	cytosol	23.32	22.77
PGSC0003DMT400076537	Potato	cytosol	22.84	22.25
PGSC0003DMT400002858	Potato	mitochondrion	22.36	21.83
PGSC0003DMT400016310	Potato	cytosol	20.91	21.7
PGSC0003DMT400029513	Potato	cytosol	20.43	21.46
PGSC0003DMT400040088	Potato	cytosol	21.15	21.46
PGSC0003DMT400018209	Potato	mitochondrion	19.71	21.24
PGSC0003DMT400058090	Potato	cytosol	20.67	21.18
PGSC0003DMT400009280	Potato	cytosol	20.67	21.13
PGSC0003DMT400027634	Potato	cytosol	18.75	20.1

Protein Annotations

EnsemblPlants:PGSC0003DMT400036862	EnsemblPlantsGene:PGSC0003DMG400014215	EntrezGene:102591622	Gene3D:3.20.90.10	InterPro:IPR025659	InterPro:Tubby-like_C
InterPro:Tubby_C	PANTHER:PTHR16517	PANTHER:PTHR16517:SF27	PFAM:PF01167	PGSC:PGSC0003DMG400014215	PRINTS:PR01573
RefSeq:XP_015161670.1	SUPFAM:SSF54518	UniParc:UPI000295C62D	UniProt:M1B4D5	MapMan:15.5.21	:

Description

Tubby protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014215]

Coordinates

chr3:-:57375758..57379238

Molecular Weight (calculated)

46506.0 Da

IEP (calculated)

9.555

GRAVY (calculated)

-0.607

Length

416 amino acids

Sequence
(BLAST)

001: MSGFKRTTNP LRSSSSYNSL YDNPLNELGQ NRSSSNGSST VGEALGVHLL QNQLVISDNK ENAAPDKAEK SNLCDKENVL RYDWTSKVVN NEFTSAPRVG
101: ADVKDSVLRP SSLQLCIQKH EPDSKIGLKI WEHADTETPN SANIWDYSDS EAAPASSWST LPNRSLLYRP LPIDIGRCTC VIVKEASPES RDGGSFYSLY
201: TNEGQGRQNR KLAIAHHRRR NGKSEFVVAQ NTKGIWGKSD DSLIGHVTAN LLGSKYQIWG QGSPTSTTKQ SKLLGAVTFM PTIATWTGSY RRIKACIPKH
301: QSMQLKCTAQ HINGLPADWE EHMDKVNQLF SKIPHYNKVS RQYELDFRDR GRAGLRIQSS VKNFQLTMEK NGRQTILQLG RVGKAKYVMD YRYPLTGYQA
401: FCICLASIDS KLCCTL

Best Arabidopsis Sequence Match ( AT1G16070.1 )
(BLAST)

001: MAGSRKVNDL LEENKGNVDT ITGSLSTQKG EDKENVSPEK VSTSVETRKL DRALKSQSMK GNSGFPTEVT NFKSFSTGGR TALKQSSLQA CMQKNSEVDK
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV

Arabidopsis Description

TULP8TLP8 [Source:UniProtKB/TrEMBL;Acc:A0A178WHW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.