Factsheet for PGSC0003DMT400040088

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g062670.2.1	Tomato	cytosol	96.59	96.35
PGSC0003DMT400016310	Potato	cytosol	80.0	81.8
PGSC0003DMT400058090	Potato	cytosol	80.73	81.53
PGSC0003DMT400009280	Potato	cytosol	78.54	79.12
VIT_04s0023g01950.t01	Wine grape	cytosol	77.32	76.76
GSMUA_Achr2P23080_001	Banana	cytosol	24.88	75.0
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	32.44	74.72
KRH28692	Soybean	cytosol	72.68	71.98
KRH76777	Soybean	cytosol	72.68	71.81
KRH69894	Soybean	cytosol	71.46	70.77
KRH08239	Soybean	cytosol	70.24	69.57
GSMUA_Achr6P09030_001	Banana	cytosol	59.51	67.4
Bra039620.1-P	Field mustard	cytosol	60.49	65.61
CDY46301	Canola	cytosol	60.49	65.61
CDY25159	Canola	cytosol	59.76	65.33
TraesCS6B01G300200.1	Wheat	cytosol	65.85	63.38
TraesCS6D01G252800.1	Wheat	cytosol	65.37	63.06
HORVU6Hr1G068970.3	Barley	cytosol	65.37	62.76
TraesCS6A01G272800.1	Wheat	cytosol	65.61	62.7
AT2G18280.2	Thale cress	cytosol	60.24	62.69
EES07397	Sorghum	cytosol	65.61	62.12
Zm00001d051568_P001	Maize	cytosol	65.61	61.7
Zm00001d017773_P001	Maize	cytosol	65.37	61.33
GSMUA_Achr2P22940_001	Banana	cytosol	54.63	61.04
CDY65687	Canola	cytosol, mitochondrion	53.9	59.09
Bra040862.1-P	Field mustard	mitochondrion, nucleus	56.1	58.08
CDY17028	Canola	mitochondrion, nucleus	55.85	57.97
Bra015624.1-P	Field mustard	cytosol, mitochondrion	56.83	57.82
PGSC0003DMT400002858	Potato	mitochondrion	58.29	56.1
AT1G47270.1	Thale cress	nucleus	55.61	55.21
PGSC0003DMT400076537	Potato	cytosol	57.32	55.04
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	39.51	54.55
PGSC0003DMT400061933	Potato	cytosol	55.37	53.29
PGSC0003DMT400029513	Potato	cytosol	51.22	53.03
PGSC0003DMT400027634	Potato	cytosol	50.0	52.84
CDY10578	Canola	mitochondrion	5.37	52.38
PGSC0003DMT400018209	Potato	mitochondrion	45.37	48.19
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	20.73	43.15
GSMUA_Achr10P...	Banana	nucleus	20.0	39.05
CDY06747	Canola	cytosol, mitochondrion	54.15	38.41
Zm00001d033948_P004	Maize	cytosol	15.61	35.36
PGSC0003DMT400036862	Potato	nucleus	21.46	21.15

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	UniProt:M1B9A0	PFAM:PF00646
PFAM:PF01167	EnsemblPlantsGene:PGSC0003DMG400015507	PGSC:PGSC0003DMG400015507	EnsemblPlants:PGSC0003DMT400040088	PRINTS:PR01573	ScanProsite:PS01200
PANTHER:PTHR16517	PANTHER:PTHR16517:SF74	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C
InterPro:Tubby_C_CS	UniParc:UPI000296E72D	SEG:seg	:	:	:

Description

Phosphoric diester hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400015507]

Coordinates

chr2:+:20944375..20947869

Molecular Weight (calculated)

46218.1 Da

IEP (calculated)

9.739

GRAVY (calculated)

-0.402

Length

410 amino acids

Sequence
(BLAST)

001: MSFKSIVREL REMRDGIGNI SRRRVEGRHW RNRTRSHIAP DVAPFEPSEQ GQWANLPPEL LFDIISRVEE SETTWPARNV VIFCASVCKS WREVTKEIVR
101: TPEECGRLTF PISLKQPGPR ESPIHCFIKR DSDNSVYRLY FGLTPSEDES DKLLLAARRI RRATSTDFVI SLVADDFSRA SNTYLGKLRS NFLGTKFTIY
201: DSQPPSVASI QERSQRSRRF CTKQVSVTGP AYNYSIANIS YELNVLRTRG PRRMHCVMHS VPFSSIQGGS APTPTSFPRS FGEKASPPSV SDSKETAKDA
301: SSPSISSSAV PLPLQESLVL KNKAPRWHEQ LQCWCLNFRG RVTVASVKNF QLVAAVAPPH NIPAAEQEKV ILQFGKIGKD IFTMDYRYPL SAYQAFAICL
401: SSFDTKPVCE

Best Arabidopsis Sequence Match ( AT1G47270.1 )
(BLAST)

001: MDLSLLLPKR SWEISGGADK ISRVAMSLKN IVKNKYKAIG RRGRSHIAPE GSSVSSSLST NEGLNQSIWV DLPPELLLDI IQRIESEQSL WPGRRDVVAC
101: ASVCKSWREM TKEVVKVPEL SGLITFPISL RQPGPRDAPI QCFIKRERAT GIYRLYLGLS PALSGDKSKL LLSAKRVRRA TGAEFVVSLS GNDFSRSSSN
201: YIGKLRSNFL GTKFTVYENQ PPPFNRKLPP SMQVSPWVSS SSSSYNIASI LYELNVLRTR GPRRMQCIMH SIPISAIQEG GKIQSPTEFT NQGKKKKKPL
301: MDFCSGNLGG ESVIKEPLIL KNKSPRWHEQ LQCWCLNFKG RVTVASVKNF QLVAAAAEAG KNMNIPEEEQ DRVILQFGKI GKDIFTMDYR YPISAFQAFA
401: ICLSSFDTKP VCE

Arabidopsis Description

TULP6Tubby-like F-box protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.