CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77280
CDX93698
CDX93699
CDY16470
CDY40610
CDY40611

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47270.1	CDX77280	AT3G60010.1	25168737
AT1G47270.1	CDX93698	AT3G60010.1	25168737
AT1G47270.1	CDX93699	AT3G60010.1	25168737
AT1G47270.1	CDY16470	AT3G60010.1	25168737
AT1G47270.1	CDY40610	AT3G60010.1	25168737
AT1G47270.1	CDY40611	AT3G60010.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040862.1-P	Field mustard	mitochondrion, nucleus	98.48	98.23
CDY65687	Canola	cytosol, mitochondrion	90.38	95.45
CDY17085	Canola	cytosol, mitochondrion	83.54	83.76
AT1G47270.1	Thale cress	nucleus	80.51	77.0
CDY13913	Canola	endoplasmic reticulum, extracellular	5.57	73.33
GSMUA_Achr2P23080_001	Banana	cytosol	22.53	65.44
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	28.1	62.36
GSMUA_Achr6P09030_001	Banana	cytosol	53.67	58.56
CDY46301	Canola	cytosol	55.7	58.2
CDY25159	Canola	cytosol	55.19	58.13
Solyc04g071750.2.1	Tomato	cytosol	58.48	57.75
Solyc03g033980.2.1	Tomato	cytosol	58.48	56.9
PGSC0003DMT400016310	Potato	cytosol	57.72	56.86
PGSC0003DMT400058090	Potato	cytosol	57.97	56.4
VIT_04s0023g01950.t01	Wine grape	cytosol	58.73	56.17
PGSC0003DMT400009280	Potato	cytosol	57.72	56.02
PGSC0003DMT400040088	Potato	cytosol	57.97	55.85
KRH28692	Soybean	cytosol	58.23	55.56
Solyc02g085130.2.1	Tomato	cytosol	57.72	55.47
Solyc02g062670.2.1	Tomato	cytosol	57.47	55.23
KRH69894	Soybean	cytosol	57.72	55.07
KRH76777	Soybean	cytosol	57.72	54.94
CDY06747	Canola	cytosol, mitochondrion	80.25	54.84
KRH08239	Soybean	cytosol	56.71	54.11
GSMUA_Achr2P22940_001	Banana	cytosol	50.13	53.95
EES07397	Sorghum	cytosol	56.96	51.96
Zm00001d051568_P001	Maize	cytosol	56.71	51.38
TraesCS6D01G252800.1	Wheat	cytosol	55.19	51.29
HORVU6Hr1G068970.3	Barley	cytosol	55.44	51.29
CDY24698	Canola	mitochondrion	45.82	51.27
Zm00001d017773_P001	Maize	cytosol	56.71	51.26
CDY27467	Canola	cytosol	51.39	51.13
TraesCS6B01G300200.1	Wheat	cytosol	54.94	50.94
TraesCS6A01G272800.1	Wheat	cytosol	54.94	50.58
CDY05258	Canola	mitochondrion	45.82	50.28
CDY36119	Canola	cytosol	52.91	49.53
CDX84977	Canola	cytosol	52.66	49.52
CDY55525	Canola	cytosol	50.38	49.5
CDY66464	Canola	cytosol	53.67	49.42
CDY02510	Canola	cytosol	40.0	49.22
CDY51990	Canola	cytosol	52.66	49.17
CDY42119	Canola	cytosol	54.18	48.97
CDY72036	Canola	cytosol	54.68	48.76
CDX92589	Canola	mitochondrion	45.82	48.4
CDY25719	Canola	cytosol	40.25	48.18
CDY13570	Canola	cytosol	51.39	47.76
CDY10578	Canola	mitochondrion	5.06	47.62
CDY45959	Canola	cytosol	51.65	47.55
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	34.18	45.45
CDY25863	Canola	cytosol, mitochondrion	43.04	45.09
CDY65845	Canola	cytosol, mitochondrion	51.14	44.89
CDY45927	Canola	cytosol, plastid	42.53	44.8
CDX87562	Canola	cytosol, mitochondrion	51.14	44.79
CDY13914	Canola	mitochondrion	26.33	42.62
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	18.73	37.56
GSMUA_Achr10P...	Banana	nucleus	18.99	35.71
Zm00001d033948_P004	Maize	cytosol	14.18	30.94
CDY35067	Canola	nucleus	19.75	20.05
CDY69989	Canola	nucleus	18.99	19.13
CDY17084	Canola	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A078FXF8	EnsemblPlants:CDY17028	ProteinID:CDY17028
ProteinID:CDY17028.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00094996001	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF01167	PFAM:PF12937	PRINTS:PR01573
ScanProsite:PS01200	PANTHER:PTHR16517	PANTHER:PTHR16517:SF75	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0004EEC700	SEG:seg	:	:

Description

BnaA08g03920DBnaA08g03920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXF8]

Coordinates

chrLK032069:-:333820..335612

Molecular Weight (calculated)

44246.6 Da

IEP (calculated)

10.447

GRAVY (calculated)

-0.331

Length

395 amino acids

Sequence
(BLAST)

001: MPLKNIVREL RGRNKANGRR GRSHIAPVGS SPSPSAADDC LDQSVWVDLP PELLLDIIHR IESGQTSWPG RRDVVACASV CKAWREITKE VVKVPELSGL
101: LTFPVSLKQP GPRDDPIQCF IKRERATGIY RLYLGLSPAL TGDKSKLLLS AKRVRRATGV EFIVSLSGKD FSRSSTNYIG KLRSNFLGTK FTVYENQPSP
201: VDSRRSFNKK LSQTMRVSPW VTSSTHSYSM ASILYELNVL RTRGPRRMQC IMNTIPVSSI QEGGQIHIPT ELSNLGSKKK RGLIDFWSGN LGGESVVKEP
301: LVLKNKLPRW HEQLQCWCLN FKGRVTVASV KNFQLMAAAA EAGKDMNIPE EEQERVILQF GKIGKDTFTM DYRYPISAFQ AFAICLSSFD TKPVR

Best Arabidopsis Sequence Match ( AT1G47270.2 )
(BLAST)

001: MDLSLLLPKR SWEISGGADK IRVAMSLKNI VKNKYKAIGR RGRSHIAPEG SSVSSSLSTN EGLNQSIWVD LPPELLLDII QRIESEQSLW PGRRDVVACA
101: SVCKSWREMT KEVVKVPELS GLITFPISLR QPGPRDAPIQ CFIKRERATG IYRLYLGLSP ALSGDKSKLL LSAKRVRRAT GAEFVVSLSG NDFSRSSSNY
201: IGKLRSNFLG TKFTVYENQP PPFNRKLPPS MQVSPWVSSS SSSYNIASIL YELNVLRTRG PRRMQCIMHS IPISAIQEGG KIQSPTEFTN QGKKKKKPLM
301: DFCSGNLGGE SVIKEPLILK NKSPRWHEQL QCWCLNFKGR VTVASVKNFQ LVAAAAEAGK NMNIPEEEQD RVILQFGKIG KDIFTMDYRY PISAFQAFAI
401: CLSSFDTKPV CE

Arabidopsis Description

TULP6Tubby-like F-box protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.