CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55525	Canola	cytosol	95.97	94.78
AT2G47900.3	Thale cress	cytosol	90.93	88.7
VIT_01s0010g01060.t01	Wine grape	mitochondrion	11.84	87.04
CDY13913	Canola	endoplasmic reticulum, extracellular	6.05	80.0
VIT_07s0104g01290.t01	Wine grape	cytosol	80.86	79.26
KRH71532	Soybean	cytosol	74.81	74.25
PGSC0003DMT400029513	Potato	cytosol	72.54	72.73
Solyc09g074510.2.1	Tomato	cytosol	72.54	72.73
GSMUA_Achr1P11290_001	Banana	cytosol	71.54	69.95
Os03t0351400-01	Rice	cytosol	52.14	69.93
GSMUA_Achr3P17440_001	Banana	cytosol	70.03	68.98
Zm00001d029165_P004	Maize	cytosol, plastid	68.51	67.83
KXG39376	Sorghum	cytosol, plastid	68.01	67.67
TraesCS4D01G164200.1	Wheat	cytosol, plastid	68.26	67.08
TraesCS4B01G166400.1	Wheat	cytosol, plastid	68.01	66.83
TraesCS4A01G140800.1	Wheat	cytosol, plastid	67.51	66.67
CDY05258	Canola	mitochondrion	57.18	63.06
CDY24698	Canola	mitochondrion	55.42	62.32
Os07t0667000-01	Rice	cytosol	62.47	61.08
CDX92589	Canola	mitochondrion	56.68	60.16
TraesCS2D01G122900.1	Wheat	cytosol	55.92	59.36
TraesCS2A01G120900.1	Wheat	mitochondrion	55.92	59.04
TraesCS2B01G141800.1	Wheat	cytosol	56.17	58.99
EER97690	Sorghum	cytosol	58.19	57.89
CDY13914	Canola	mitochondrion	34.76	56.56
CDY02510	Canola	cytosol	44.08	54.52
CDX84977	Canola	cytosol	56.68	53.57
Zm00001d007106_P001	Maize	cytosol	41.81	53.21
CDY25719	Canola	cytosol	44.08	53.03
CDY25159	Canola	cytosol	49.87	52.8
CDY65687	Canola	cytosol, mitochondrion	49.37	52.41
CDY10578	Canola	mitochondrion	5.54	52.38
CDY46301	Canola	cytosol	49.87	52.38
CDY51990	Canola	cytosol	55.67	52.25
CDY66464	Canola	cytosol	56.42	52.21
CDY36119	Canola	cytosol	55.16	51.9
CDY42119	Canola	cytosol	56.93	51.72
CDY17028	Canola	mitochondrion, nucleus	51.13	51.39
VIT_01s0010g01050.t01	Wine grape	cytosol	17.38	51.11
CDY72036	Canola	cytosol	56.93	51.02
CDY13570	Canola	cytosol	54.16	50.59
CDY17085	Canola	cytosol, mitochondrion	49.62	50.0
CDY45959	Canola	cytosol	53.9	49.88
CDY25863	Canola	cytosol, mitochondrion	45.84	48.28
CDY45927	Canola	cytosol, plastid	45.59	48.27
CDY65845	Canola	cytosol, mitochondrion	54.16	47.78
CDX87562	Canola	cytosol, mitochondrion	53.9	47.45
VIT_00s0426g00050.t01	Wine grape	extracellular	18.14	45.28
CDY06747	Canola	cytosol, mitochondrion	49.62	34.08
Zm00001d029092_P001	Maize	mitochondrion	21.66	24.86
Zm00001d047019_P001	Maize	mitochondrion	21.66	24.86
CDY35067	Canola	nucleus	19.9	20.31
CDY69989	Canola	nucleus	19.65	19.9
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	11.84	17.15
CDY17084	Canola	mitochondrion	0.25	0.49

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A078GQJ5	EnsemblPlants:CDY27467	ProteinID:CDY27467	ProteinID:CDY27467.1
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00038114001	InterPro:IPR001810
InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	PANTHER:PTHR16517	PANTHER:PTHR16517:SF36
SUPFAM:SSF54518	InterPro:Tubby-like_C	InterPro:Tubby_C	UniParc:UPI0004EE0F91	SEG:seg	:

Description

BnaC04g51080DBnaC04g51080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQJ5]

Coordinates

chrLK032205:+:45562..47148

Molecular Weight (calculated)

44159.1 Da

IEP (calculated)

10.036

GRAVY (calculated)

-0.289

Length

397 amino acids

Sequence
(BLAST)

001: MSLKSLIQEM RGELGRKGFG FGRSRSQRVV QDSCVDAFKQ SCWATMPPEL LRDVLMRIEA SEDTWPSRKN VVACAGVCRN WRDLVKEIVK VPQLSSKLTF
101: PISLKQPGPR GSSLVQCYII RNRTNQTYHL YLGLNQAAAS ASNDDGKFLL AAKRFRRPTC TDYIISLNSV DVSRGSSSYL GKLRSNFLGT KFTVYDAQPT
201: NPGAQLTRTR STRLLSLKQV SPRVPSGNYP VSHISYELNV LGSRGPRRMQ CVMDAIPASA VEPGGTAPTQ TELVHSNLDM FPSFSFFRSK SVRSESLPQP
301: AQKEGLLVLK NKAPRWHEQL QCWCLNFNGR VTVASVKNFQ LVAAPENGPA GPEHENVILQ FGKVGKDVFT MDFQYPISAF QAFTICLSSF DTKIACE

Best Arabidopsis Sequence Match ( AT2G47900.3 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAAASND DGKFLLAAKR FRRPTCTDYI ISLNCDDVSR GSNTYIGKLR SNFLGTKFTV
201: YDAQPTNPGT QVTRTRSSRL LSLKQVSPRI PSGNYPVAHI SYELNVLGSR GPRRMQCVMD AIPASAVEPG GTAPTQTELV HSNLDSFPSF SFFRSKSIRA
301: ESLPSGPSSA AQKEGLLVLK NKAPRWHEQL QCWCLNFNGR VTVASVKNFQ LVAAPENGPA GPEHENVILQ FGKVGKDVFT MDYQYPISAF QAFTICLSSF
401: DTKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.