Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27467 | Canola | cytosol | 88.7 | 90.93 |
| Bra021446.1-P | Field mustard | cytosol | 89.68 | 90.8 |
| CDY55525 | Canola | cytosol | 88.94 | 90.05 |
| VIT_01s0010g01060.t01 | Wine grape | mitochondrion | 11.55 | 87.04 |
| VIT_07s0104g01290.t01 | Wine grape | cytosol | 82.56 | 82.96 |
| PGSC0003DMT400029513 | Potato | cytosol | 74.69 | 76.77 |
| Solyc09g074510.2.1 | Tomato | cytosol | 74.2 | 76.26 |
| KRH71532 | Soybean | cytosol | 74.69 | 76.0 |
| GSMUA_Achr1P11290_001 | Banana | cytosol | 71.99 | 72.17 |
| Os03t0351400-01 | Rice | cytosol | 51.84 | 71.28 |
| GSMUA_Achr3P17440_001 | Banana | cytosol | 70.02 | 70.72 |
| KXG39376 | Sorghum | cytosol, plastid | 69.04 | 70.43 |
| Zm00001d029165_P004 | Maize | cytosol, plastid | 69.29 | 70.32 |
| TraesCS4D01G164200.1 | Wheat | cytosol, plastid | 68.3 | 68.81 |
| TraesCS4B01G166400.1 | Wheat | cytosol, plastid | 68.06 | 68.56 |
| TraesCS4A01G140800.1 | Wheat | cytosol, plastid | 67.57 | 68.41 |
| Os07t0667000-01 | Rice | cytosol | 62.41 | 62.56 |
| TraesCS2D01G122900.1 | Wheat | cytosol | 55.53 | 60.43 |
| TraesCS2A01G120900.1 | Wheat | mitochondrion | 55.53 | 60.11 |
| TraesCS2B01G141800.1 | Wheat | cytosol | 55.77 | 60.05 |
| AT3G06380.1 | Thale cress | mitochondrion | 55.77 | 59.74 |
| EER97690 | Sorghum | cytosol | 58.48 | 59.65 |
| AT5G18680.1 | Thale cress | mitochondrion | 55.04 | 57.58 |
| Zm00001d007106_P001 | Maize | cytosol | 42.01 | 54.81 |
| VIT_01s0010g01050.t01 | Wine grape | cytosol | 17.94 | 54.07 |
| AT2G18280.2 | Thale cress | cytosol | 52.33 | 54.06 |
| AT1G43640.1 | Thale cress | cytosol | 54.79 | 51.98 |
| AT1G25280.1 | Thale cress | cytosol | 56.76 | 51.91 |
| AT1G76900.1 | Thale cress | cytosol | 56.02 | 50.11 |
| AT1G47270.1 | Thale cress | nucleus | 50.12 | 49.39 |
| AT1G53320.1 | Thale cress | mitochondrion | 45.95 | 49.34 |
| AT1G61940.2 | Thale cress | cytosol | 31.94 | 49.06 |
| VIT_00s0426g00050.t01 | Wine grape | extracellular | 17.94 | 45.91 |
| Zm00001d029092_P001 | Maize | mitochondrion | 21.38 | 25.14 |
| Zm00001d047019_P001 | Maize | mitochondrion | 21.38 | 25.14 |
| AT1G16070.1 | Thale cress | nucleus | 21.13 | 21.66 |
| Zm00001d039784_P001 | Maize | mitochondrion, nucleus, peroxisome, plastid | 12.04 | 17.88 |
Protein Annotations
| MapMan:15.5.21 | Gene3D:3.20.90.10 | EntrezGene:819402 | UniProt:A0A178VYB2 | ProteinID:AEC10909.1 | EMBL:AK318961 |
| ArrayExpress:AT2G47900 | EnsemblPlantsGene:AT2G47900 | RefSeq:AT2G47900 | TAIR:AT2G47900 | RefSeq:AT2G47900-TAIR-G | EnsemblPlants:AT2G47900.3 |
| TAIR:AT2G47900.3 | Unigene:At.27566 | Symbol:AtTLP3 | UniProt:C0Z2Z7 | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009536 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0009620 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0042542 | GO:GO:0071470 | InterPro:IPR001810 | InterPro:IPR025659 | RefSeq:NP_001189775.1 | ProteinID:OAP10043.1 |
| PFAM:PF00646 | PFAM:PF01167 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR01573 | PANTHER:PTHR16517 | PANTHER:PTHR16517:SF36 | SUPFAM:SSF54518 |
| Symbol:TLP3 | InterPro:Tubby-like_C | InterPro:Tubby_C | UniParc:UPI00000A8946 | SEG:seg | : |
Description
AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
Coordinates
chr2:-:19610923..19613232
Molecular Weight (calculated)
45385.3 Da
IEP (calculated)
9.773
GRAVY (calculated)
-0.330
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAAASND DGKFLLAAKR FRRPTCTDYI ISLNCDDVSR GSNTYIGKLR SNFLGTKFTV
201: YDAQPTNPGT QVTRTRSSRL LSLKQVSPRI PSGNYPVAHI SYELNVLGSR GPRRMQCVMD AIPASAVEPG GTAPTQTELV HSNLDSFPSF SFFRSKSIRA
301: ESLPSGPSSA AQKEGLLVLK NKAPRWHEQL QCWCLNFNGR VTVASVKNFQ LVAAPENGPA GPEHENVILQ FGKVGKDVFT MDYQYPISAF QAFTICLSSF
401: DTKIACE
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAAASND DGKFLLAAKR FRRPTCTDYI ISLNCDDVSR GSNTYIGKLR SNFLGTKFTV
201: YDAQPTNPGT QVTRTRSSRL LSLKQVSPRI PSGNYPVAHI SYELNVLGSR GPRRMQCVMD AIPASAVEPG GTAPTQTELV HSNLDSFPSF SFFRSKSIRA
301: ESLPSGPSSA AQKEGLLVLK NKAPRWHEQL QCWCLNFNGR VTVASVKNFQ LVAAPENGPA GPEHENVILQ FGKVGKDVFT MDYQYPISAF QAFTICLSSF
401: DTKIACE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.