CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g01060.t01	Wine grape	mitochondrion	9.52	70.37
TraesCS2D01G122900.1	Wheat	cytosol	64.66	68.98
TraesCS2B01G141800.1	Wheat	cytosol	65.16	68.78
TraesCS2A01G120900.1	Wheat	mitochondrion	64.41	68.35
KXG39376	Sorghum	cytosol, plastid	68.17	68.17
Os07t0667000-01	Rice	cytosol	68.92	67.73
Zm00001d007106_P001	Maize	cytosol	52.63	67.31
GSMUA_Achr1P11290_001	Banana	cytosol	64.41	63.3
GSMUA_Achr3P17440_001	Banana	cytosol	62.91	62.28
VIT_07s0104g01290.t01	Wine grape	cytosol	62.91	61.98
PGSC0003DMT400029513	Potato	cytosol	60.65	61.11
Solyc09g074510.2.1	Tomato	cytosol	60.4	60.86
AT2G47900.3	Thale cress	cytosol	59.65	58.48
CDY55525	Canola	cytosol	58.9	58.46
KRH71532	Soybean	cytosol	58.4	58.25
Bra021446.1-P	Field mustard	cytosol	58.65	58.21
CDY27467	Canola	cytosol	57.89	58.19
EES03425	Sorghum	plastid	43.86	48.61
KXG23034	Sorghum	cytosol, mitochondrion	50.63	46.22
EES18499	Sorghum	mitochondrion	42.86	45.97
EES07397	Sorghum	cytosol	49.62	45.73
EES19596	Sorghum	mitochondrion	49.87	44.22
EES08030	Sorghum	cytosol, mitochondrion	50.38	44.08
OQU82627	Sorghum	cytosol	49.12	43.27
KXG24166	Sorghum	cytosol	47.62	42.41
OQU78419	Sorghum	cytosol	38.6	40.85
EES01812	Sorghum	mitochondrion	47.87	39.79
VIT_01s0010g01050.t01	Wine grape	cytosol	13.03	38.52
VIT_00s0426g00050.t01	Wine grape	extracellular	14.54	36.48
Zm00001d029092_P001	Maize	mitochondrion	29.07	33.53
Zm00001d047019_P001	Maize	mitochondrion	29.07	33.53
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	15.79	22.99
KXG29622	Sorghum	plastid	19.05	17.92

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	EntrezGene:8074409	UniProt:C5X4V0	EnsemblPlants:EER97690	ProteinID:EER97690
ProteinID:EER97690.1	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008289
GO:GO:0035091	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573
ScanProsite:PS01200	PANTHER:PTHR16517	PANTHER:PTHR16517:SF36	EnsemblPlantsGene:SORBI_3002G408300	SUPFAM:SSF54518	unigene:Sbi.6261
InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0001A8355E	RefSeq:XP_002461169.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:75729659..75733235

Molecular Weight (calculated)

43447.1 Da

IEP (calculated)

9.684

GRAVY (calculated)

-0.217

Length

399 amino acids

Sequence
(BLAST)

001: MPFSSMIHEM KGEIGAISSR GLLRFRSGGH AAAAGRASAA AEPDEALRES CWARVPPELL RMVLARVEHE EARWPGRSAV VASAGVCRCW RAVVKEMVRV
101: PEVSGKITFP ISLKQPGPRD APMKCFIRRN RATQSYSLCI GITDALADDG KFLLAARRSR RPAGTEYLIS LDAKNTSKGT CIGKLRSNFL GTKFTVYDAH
201: PPCTGAVVSK GPSAHMIGSA QVSPGVPAGN YPISHISYEA TFGSRYPRKM NCVMDSIPLS AIKEGGTAPT QTEFPSINSN SFASVPFFRK SGRLDSSGVQ
301: LATQNEAKMV LKNKSPNWHE PLQCWCLNFH GRVTVASVKN FQLVASGESD LNNQGDDDVI LQFGKVGKDL FTMDYRYPIS AFQAFAICLS SFDTKITRE

Best Arabidopsis Sequence Match ( AT1G76900.2 )
(BLAST)

001: MSFRSIVRDV RDSIGSLSRR SFDFKLSSLN KEGGKSRGSV QDSHEEQLVV TIQETPWANL PPELLRDVIK RLEESESVWP ARRHVVACAS VCRSWRDMCK
101: EIVQSPELSG KITFPVSLKQ PGPRDATMQC FIKRDKSNLT YHLYLCLSPA LLVENGKFLL SAKRIRRTTY TEYVISMHAD TISRSSNTYI GKIRSNFLGT
201: KFIIYDTQPA YNSNIARAVQ PVGLSRRFYS KRVSPKVPSG SYKIAQVSYE LNVLGTRGPR RMHCAMNSIP ASSLAEGGTV PGQPDIIVPR SILDESFRSI
301: TSSSSRKITY DYSNDFSSAR FSDILGPLSE DQEVVLEEGK ERNSPPLVLK NKPPRWHEQL QCWCLNFRGR VTVASVKNFQ LIAANQPQPQ PQPQPQPQPL
401: TQPQPSGQTD GPDKIILQFG KVGKDMFTMD FRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP1Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WI43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.