Factsheet for Zm00001d039784_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, nucleus

Predictor Summary:

mitochondrion 3
peroxisome 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047019_P001	Maize	mitochondrion	86.5	68.5
Zm00001d029092_P001	Maize	mitochondrion	86.13	68.21
Zm00001d007106_P001	Maize	cytosol	32.85	28.85
EER97690	Sorghum	cytosol	22.99	15.79
Os07t0667000-01	Rice	cytosol	21.17	14.29
Zm00001d033948_P004	Maize	cytosol	9.12	13.81
TraesCS2B01G141800.1	Wheat	cytosol	17.88	12.96
Bra021446.1-P	Field mustard	cytosol	18.98	12.94
CDY55525	Canola	cytosol	18.98	12.94
VIT_07s0104g01290.t01	Wine grape	cytosol	18.98	12.84
TraesCS2D01G122900.1	Wheat	cytosol	17.52	12.83
TraesCS2A01G120900.1	Wheat	mitochondrion	17.52	12.77
Zm00001d029165_P004	Maize	cytosol, plastid	17.88	12.22
GSMUA_Achr3P17440_001	Banana	cytosol	17.88	12.16
GSMUA_Achr1P11290_001	Banana	cytosol	17.88	12.07
AT2G47900.3	Thale cress	cytosol	17.88	12.04
PGSC0003DMT400029513	Potato	cytosol	17.15	11.87
Solyc09g074510.2.1	Tomato	cytosol	17.15	11.87
CDY27467	Canola	cytosol	17.15	11.84
Zm00001d011578_P003	Maize	nucleus	15.33	11.73
Zm00001d017773_P001	Maize	cytosol	17.52	10.98
Zm00001d043895_P003	Maize	cytosol	14.96	10.85
Zm00001d051568_P001	Maize	cytosol	17.15	10.78
Zm00001d053179_P001	Maize	cytosol	17.15	10.49
KRH71532	Soybean	cytosol	14.96	10.25
Zm00001d002896_P001	Maize	cytosol	15.69	9.77
Zm00001d038310_P003	Maize	mitochondrion	16.79	9.24
Zm00001d052765_P002	Maize	mitochondrion	15.33	9.21
Zm00001d042724_P002	Maize	mitochondrion	16.06	9.17
Zm00001d038691_P001	Maize	mitochondrion	11.68	8.72
VIT_01s0010g01050.t01	Wine grape	cytosol	3.65	7.41
VIT_00s0426g00050.t01	Wine grape	extracellular	2.92	5.03
Zm00001d015485_P001	Maize	plastid	5.47	3.73
VIT_01s0010g01060.t01	Wine grape	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d039784_P001	EnsemblPlants:Zm00001d039784_T001	EnsemblPlantsGene:Zm00001d039784	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR16517	PANTHER:PTHR16517:SF36	PFAM:PF00646
ProteinID:ONM29938.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI00084523D3	UniProt:A0A1D6ML50	MapMan:15.5.21

Description

Tubby-like F-box protein 3

Coordinates

chr3:+:14600793..14601798

Molecular Weight (calculated)

29054.3 Da

IEP (calculated)

10.393

GRAVY (calculated)

-0.156

Length

274 amino acids

Sequence
(BLAST)

001: MVESFLLRRL PIASYAQPQP QPAAAPGFDF LSEVYGAASF AGPNAGDYGG EMGFLDIVEP KAASATLVDG ATGLGACKVE PGLAKSGGAF GTGAGAAPPA
101: ALASKKKRVE GMLSKNLMVE HRRRKRLNDR LHATVRRAQD QQGPRKVMPF SSMIQEMKGK IGAISSRGVL RFRPGGHAGA GRAPAAEPDE ASREGCWAQL
201: PFELLRMVLV RVEDQEPRWP ARSAIVACAC VCRCWRAAVK IVRVPEASGK LTFPISQAGC FGSLSPTLNP NTKL

Best Arabidopsis Sequence Match ( AT2G47900.3 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAAASND DGKFLLAAKR FRRPTCTDYI ISLNCDDVSR GSNTYIGKLR SNFLGTKFTV
201: YDAQPTNPGT QVTRTRSSRL LSLKQVSPRI PSGNYPVAHI SYELNVLGSR GPRRMQCVMD AIPASAVEPG GTAPTQTELV HSNLDSFPSF SFFRSKSIRA
301: ESLPSGPSSA AQKEGLLVLK NKAPRWHEQL QCWCLNFNGR VTVASVKNFQ LVAAPENGPA GPEHENVILQ FGKVGKDVFT MDYQYPISAF QAFTICLSSF
401: DTKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.