Factsheet for Zm00001d002896_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82627	Sorghum	cytosol	91.14	88.52
Os04t0687900-01	Rice	cytosol	78.64	74.89
TraesCS2D01G584900.1	Wheat	cytosol, mitochondrion	76.36	71.64
TraesCS2A01G574000.1	Wheat	golgi	76.36	71.34
TraesCS2B01G613800.1	Wheat	mitochondrion, nucleus	76.36	71.19
Zm00001d052765_P002	Maize	mitochondrion	68.41	66.01
Zm00001d042724_P002	Maize	mitochondrion	66.36	60.83
Zm00001d038310_P003	Maize	mitochondrion	68.41	60.44
Zm00001d053179_P001	Maize	cytosol	60.0	58.93
Zm00001d029165_P004	Maize	cytosol, plastid	51.36	56.36
HORVU2Hr1G124880.1	Barley	plastid	77.05	54.59
Zm00001d011578_P003	Maize	nucleus	41.82	51.4
Zm00001d038691_P001	Maize	mitochondrion	42.27	50.68
Zm00001d017773_P001	Maize	cytosol	49.77	50.11
Zm00001d051568_P001	Maize	cytosol	48.64	49.08
Zm00001d043895_P003	Maize	cytosol	41.14	47.88
Zm00001d007106_P001	Maize	cytosol	32.73	46.15
Zm00001d033948_P004	Maize	cytosol	10.68	25.97
Zm00001d015485_P001	Maize	plastid	19.55	21.39
Zm00001d029092_P001	Maize	mitochondrion	16.59	21.1
Zm00001d047019_P001	Maize	mitochondrion	16.59	21.1
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	9.77	15.69

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A1D6E527	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	ProteinID:ONM15603.1
PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517
PANTHER:PTHR16517:SF38	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
UniParc:UPI0008438F89	EnsemblPlantsGene:Zm00001d002896	EnsemblPlants:Zm00001d002896_P001	EnsemblPlants:Zm00001d002896_T001	SEG:seg	:

Description

TUB-transcription factor 4 TUB-transcription factor 4

Coordinates

chr2:+:26117809..26122010

Molecular Weight (calculated)

49333.9 Da

IEP (calculated)

9.677

GRAVY (calculated)

-0.501

Length

440 amino acids

Sequence
(BLAST)

001: MSFRSMVRDI RESFGNISRR NFEVRIHHRG KSLGSSGDLQ DRPAEVQQSR WASLPPELLC DVMKRLEEDD SSWPDRKDVV SCASVCTTWR DMCKDIVRSP
101: EHCAKLTFPV SLKQPGPRDG VIQCFIKRDK SKLTYRLYLS LSSGVLDENG KFLLAAKRSR RMAHTEYAIF MDSRNFSRSS TGYIGKLRSN FLGTKFIIYD
201: TQAPYNGGRV CTQERAPSRR LSSRKVSPRV PSGSYPVAQV NYELNVLGTR GPRRMQCAMH SIPASAVEPG GVVPGQPKEL LPRLFDESFR STATSSFSKY
301: SVADSSMDLG SCPFSEVEVG GGSLREGDES EKERPLVLRN KAPRWHEQLQ CWCLNFRGRV TVASVKNFQL IAPAKTQPQP QASGPPPPPP PSSSSYHDPV
401: ILQFGKVGRD MFTMDYRYPL SAFQAFAICL TSFDTKLACE

Best Arabidopsis Sequence Match ( AT1G43640.1 )
(BLAST)

001: MSFLSIVRDV RDTVGSFSRR SFDVRVSNGT THQRSKSHGV EAHIEDLIVI KNTRWANLPA ALLRDVMKKL DESESTWPAR KQVVACAGVC KTWRLMCKDI
101: VKSPEFSGKL TFPVSLKQPG PRDGIIQCYI KRDKSNMTYH LYLSLSPAIL VESGKFLLSA KRSRRATYTE YVISMDADNI SRSSSTYIGK LKSNFLGTKF
201: IVYDTAPAYN SSQILSPPNR SRSFNSKKVS PKVPSGSYNI AQVTYELNLL GTRGPRRMNC IMHSIPSLAL EPGGTVPSQP EFLQRSLDES FRSIGSSKIV
301: NHSGDFTRPK EEEGKVRPLV LKTKPPRWLQ PLRCWCLNFK GRVTVASVKN FQLMSAATVQ PGSGSDGGAL ATRPSLSPQQ PEQSNHDKII LHFGKVGKDM
401: FTMDYRYPLS AFQAFAISLS TFDTKLACE

Arabidopsis Description

TULP5Tubby-like F-box protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q944S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.