Factsheet for TraesCS2B01G613800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

cytosol 1
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G584900.1	Wheat	cytosol, mitochondrion	98.73	99.36
TraesCS2A01G574000.1	Wheat	golgi	98.52	98.73
Os04t0687900-01	Rice	cytosol	77.54	79.22
Zm00001d002896_P001	Maize	cytosol	71.19	76.36
OQU82627	Sorghum	cytosol	72.67	75.72
HORVU2Hr1G124880.1	Barley	plastid	96.82	73.59
TraesCS7B01G227000.1	Wheat	mitochondrion	69.7	71.83
TraesCS1B01G282900.1	Wheat	mitochondrion	62.92	65.42
TraesCS3B01G411000.1	Wheat	mitochondrion	59.96	62.89
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	57.2	61.36
TraesCS5B01G123800.1	Wheat	golgi	56.99	61.28
TraesCS4B01G166400.1	Wheat	cytosol, plastid	45.76	53.47
TraesCS2B01G141800.1	Wheat	cytosol	41.74	52.12
TraesCS3B01G304600.1	Wheat	cytosol	37.5	50.43
TraesCS6B01G300200.1	Wheat	cytosol	45.13	50.0
TraesCS1B01G347200.1	Wheat	mitochondrion	37.5	47.45
TraesCS6B01G177300.1	Wheat	plastid	17.16	20.66

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167
PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF38	SUPFAM:SSF54518
SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS2B01G613800	EnsemblPlants:TraesCS2B01G613800.1	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:792989931..792991896

Molecular Weight (calculated)

52076.4 Da

IEP (calculated)

9.341

GRAVY (calculated)

-0.522

Length

472 amino acids

Sequence
(BLAST)

001: MTLRSIVRDL RESFGNLSRR NFEAKISSVP SLSGHHRGKS LESASDLQDS LVTNLQGNWA SLPPELLRDV MKRLEEDDSN WPSRKDVVAC ASVCTTWRDM
101: CKDIVRNPEF CGKLTFPVSL KQPGSRDGLI QCFIKRDKSK LTYRLYLSLT SAVLDDNGKF LLSAKRSRRT TYTDYAISMD PKNISRSSSG YIGKLRSNFL
201: GTKFIIYDTQ PSYNASKLCP QERTSRRFSS RKVSPKVPAA TGSYPIAQVN YELNVLGTRG PRRMQCTMNS IPTSAVDPDG VVPGQPKELL PRLFEESFRT
301: TASSRYSTDF SSCHFSEFGG GPLREEGGDE NAGDKESPLV LKNKSPRWHE QLQCWCLNFR GRVTVASVKN FQLIAAPAPP PPASGGEAAP EPSSQTQPPQ
401: QQPTSAAAAQ PQPAGSSLSA SSSSSSSHHD TVLLQFGKVS KDTFTMDYRY PLSAFQAFAI CLTSFDTKLA CE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.