Factsheet for TraesCS1B01G282900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G273200.1	Wheat	mitochondrion	97.8	97.8
TraesCS1A01G273100.1	Wheat	mitochondrion	98.02	97.59
HORVU1Hr1G074940.3	Barley	cytosol, mitochondrion, nucleus, plastid	96.26	96.68
Os05t0437900-01	Rice	mitochondrion	87.0	88.76
EES19596	Sorghum	mitochondrion	86.78	87.56
TraesCS3B01G411000.1	Wheat	mitochondrion	77.53	78.22
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	52.2	76.95
Zm00001d038310_P003	Maize	mitochondrion	79.52	72.49
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	70.04	72.27
TraesCS5B01G123800.1	Wheat	golgi	68.72	71.07
TraesCS7B01G227000.1	Wheat	mitochondrion	68.28	67.69
TraesCS2B01G613800.1	Wheat	mitochondrion, nucleus	65.42	62.92
TraesCS4B01G166400.1	Wheat	cytosol, plastid	49.34	55.45
TraesCS2B01G141800.1	Wheat	cytosol	45.59	54.76
TraesCS6B01G300200.1	Wheat	cytosol	50.88	54.23
TraesCS3B01G304600.1	Wheat	cytosol	41.41	53.56
TraesCS1B01G347200.1	Wheat	mitochondrion	39.65	48.26
TraesCS6B01G177300.1	Wheat	plastid	18.06	20.92

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167
PRINTS:PR01573	ScanProsite:PS01200	PANTHER:PTHR16517	PANTHER:PTHR16517:SF39	SUPFAM:SSF54518	SUPFAM:SSF81383
EnsemblPlantsGene:TraesCS1B01G282900	EnsemblPlants:TraesCS1B01G282900.1	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	SEG:seg

Description

No Description!

Coordinates

chr1B:-:491982667..491984459

Molecular Weight (calculated)

50541.6 Da

IEP (calculated)

9.870

GRAVY (calculated)

-0.338

Length

454 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDGFGSLSRR SFDVTISGLS GLTGHHRGKC QSTVHELRDA DLIVQESRWA SLPPELLSDV IRRLEASEST WPSRKHVVSC AAVCKAWREM
101: CREIVTSPEF CGKLTFPVSL KQPGPRDGMI QCFIKRDKSK STYHLYLCLT NAVLVENGKF LLSAKRIRRT TCTEYVISMD AENISRSSST YIGKLRSNFL
201: GTKFIVYDTQ PPYNGAIVPS IGRSSRRFNS KKVSPKVPSG SYNIAQVSYE LNVLGTRGPR RMNCIMHSIP ASSVEPGGIV PGQPDQIMPR ALEDSFRSMS
301: SFSKSSIMDR STDFSSSRYF SSSRFLSDIA GGAISRDEDG ENKERPLVLR NKVPRWHEQL QCWCLNFRGR VTIASVKNFQ LIAAPSQPAP PPAGAPTPTP
401: APSQPAPAPE QDKIILQFGK VSKDMFTMDY RYPLSAFQAF AMCLSSFDTK LACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.