Factsheet for Os05t0437900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19596	Sorghum	mitochondrion	91.91	90.89
HORVU1Hr1G074940.3	Barley	cytosol, mitochondrion, nucleus, plastid	88.76	87.39
TraesCS1A01G273100.1	Wheat	mitochondrion	89.21	87.06
TraesCS1D01G273200.1	Wheat	mitochondrion	88.76	87.0
TraesCS1B01G282900.1	Wheat	mitochondrion	88.76	87.0
Os01t0866800-01	Rice	mitochondrion	81.35	80.8
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	54.61	78.9
Zm00001d038310_P003	Maize	mitochondrion	82.92	74.1
Os12t0163400-01	Rice	cytosol	73.26	73.26
Os04t0687900-01	Rice	cytosol	72.58	69.91
Os08t0103300-01	Rice	mitochondrion	69.44	68.51
Os03t0351400-01	Rice	cytosol	40.67	61.15
Os11t0163600-01	Rice	cytosol, mitochondrion	22.92	60.71
Os02t0705300-01	Rice	cytosol	52.81	54.91
Os07t0667000-01	Rice	cytosol	49.89	54.68
Os05t0560400-00	Rice	cytosol	41.57	52.56
Os01t0674500-01	Rice	cytosol	42.02	52.53
Os05t0514300-01	Rice	mitochondrion	42.47	50.81
Os01t0759100-01	Rice	cytosol, plastid	37.3	45.11
Os03t0348500-00	Rice	extracellular	10.79	28.4
Os02t0179400-00	Rice	nucleus	11.24	12.11

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	EntrezGene:4338909	ProteinID:AAT07611.1	ProteinID:AAV59313.1
EMBL:AK103583	ProteinID:BAF17570.1	ProteinID:BAS94218.1	ProteinID:EAZ34435.1	ProteinID:EEE63852.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008289	GO:GO:0035091
InterPro:IPR001810	InterPro:IPR025659	EnsemblPlantsGene:Os05g0437900	EnsemblPlants:Os05t0437900-01	PFAM:PF00646	PFAM:PF01167
PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF39	UniProt:Q75HX5
SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI000035DFFB
RefSeq:XP_015640389.1	SEG:seg	:	:	:	:

Description

tubby-like protein 1, tubby-like protein 8, F-box protein 259Tubby family protein. (Os05t0437900-01);Similar to Tubby-like F-box protein 8. (Os05t0437900-03)

Coordinates

chr5:-:21460347..21463248

Molecular Weight (calculated)

49557.4 Da

IEP (calculated)

9.710

GRAVY (calculated)

-0.336

Length

445 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDSFGSLSRR SFEVTLAGLS GLTGHHRGKS QSTVHELCDA DLIIQESRWA SLPPELLRDV IRRLEASEST WPSRKDVVSC AAVCKAWREM
101: CKEIVLSPEF CGKLTFPLSL KQPGPRDGMI QCFIKRDKSK STYHLYLCLS TAVLADSGKF LLSAKRHRKT TCTEYVISMD ADNISRSSST YIGKLRSNFL
201: GTKFIIYDTQ PSYNGAVIPP VGRSSRRFNS KKVSPKMPSG SYNIAQVTYE LNVLGTRGPR RMHCVMHSIP ASSVEPGGIV PGQPEQIVPR AFEESFRSTT
301: SFSKSSIMDR SMDFSSSRDF SSARFSDIAG GTINGDEEGQ NKERPLVLRN KAPRWHEQLQ CWCLNFRGRV TIASVKNFQL IAAPAQPPAG APTPSQPAPP
401: EQDKIILQFG KVAKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.