Factsheet for Os02t0179400-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0422200-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16070.1	Os08t0422200-00	AT2G04620.1	16792696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G138700.1	Wheat	plastid	50.12	53.08
TraesCS6B01G177300.1	Wheat	plastid	50.36	53.06
HORVU6Hr1G029710.3	Barley	plastid	50.61	52.91
TraesCS6A01G149400.1	Wheat	plastid	50.36	52.0
Zm00001d015485_P001	Maize	plastid	49.64	50.99
KXG29622	Sorghum	plastid	51.33	50.0
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	37.29	41.96
VIT_09s0018g01630.t01	Wine grape	cytosol	34.14	37.4
KRH23693	Soybean	plastid	28.09	32.58
Bra026081.1-P	Field mustard	nucleus	29.06	30.85
CDY35067	Canola	nucleus	29.06	30.85
Solyc03g117730.2.1	Tomato	cytosol	30.27	30.79
PGSC0003DMT400036862	Potato	nucleus	30.99	30.77
AT1G16070.1	Thale cress	nucleus	29.3	30.48
CDY69989	Canola	nucleus	28.09	29.59
Os01t0759100-01	Rice	cytosol, plastid	11.62	13.04
Os11t0163600-01	Rice	cytosol, mitochondrion	5.08	12.5
Os02t0705300-01	Rice	cytosol	12.83	12.38
Os05t0514300-01	Rice	mitochondrion	11.14	12.37
Os05t0560400-00	Rice	cytosol	10.41	12.22
Os12t0163400-01	Rice	cytosol	13.08	12.13
Os01t0674500-01	Rice	cytosol	10.41	12.08
Os08t0103300-01	Rice	mitochondrion	13.08	11.97
Os04t0687900-01	Rice	cytosol	12.59	11.26
Os05t0437900-01	Rice	mitochondrion	12.11	11.24
Os07t0667000-01	Rice	cytosol	10.9	11.08
Os01t0866800-01	Rice	mitochondrion	11.38	10.49
Os03t0351400-01	Rice	cytosol	7.51	10.47
Os03t0348500-00	Rice	extracellular	2.42	5.92

Protein Annotations

EnsemblPlants:Os02t0179400-00	EnsemblPlantsGene:Os02g0179400	Gene3D:3.20.90.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289
GO:GO:0035091	InterPro:IPR025659	InterPro:Tubby-like_C	InterPro:Tubby_C	PANTHER:PTHR16517	PANTHER:PTHR16517:SF27
PFAM:PF01167	ProteinID:BAS77292.1	SEG:seg	SUPFAM:SSF54518	UniParc:UPI00039398E6	UniProt:A0A0P0VFG1
MapMan:15.5.21	:	:	:	:	:

Description

Tubby-like protein 4, tubby-like protein 13Similar to Tubby-like protein 13. (Os02t0179400-00)

Coordinates

chr2:-:4413010..4415318

Molecular Weight (calculated)

44997.9 Da

IEP (calculated)

11.017

GRAVY (calculated)

-0.670

Length

413 amino acids

Sequence
(BLAST)

001: MAKSKEEKLQ KGIKSIHPKK SNPQPRRRPL PRFKPKPTPL SRFKFKSSLQ ITTTNHKPNP HNLNKTNTQP LSLTHTELAS SRASPPMAAT KREPLRPISS
101: NAGTVERRAR GGAAAAAAAK EKEKENEVPT EIGRGKDGGE KKPPVVVAVV VPPAPPLKPS SLQVRMKAEE EKEREEEEEG SSPAVALVAG LQVRMGPRGR
201: ELLLPPPPPP PPLPLPTSSS YEAWDLSDNE AAPASSWATL PNRALLCRPL PLDVGRCTCI IAKETLAAAA AGARGVALYS LYTNEGQGRQ DRKLAVARHR
301: RRRGRSEFVV AQNLDGIFCT SDKNFLGTLS SNLVGSRYRI WGQGNRVDEI KSQSKRLLGV VAFAPTVTTL TGSFRSMRAW IPKNQSIHLK NSNSAQATHQ
401: WASKGLAREE DQG

Best Arabidopsis Sequence Match ( AT1G16070.2 )
(BLAST)

001: MAGSRKVNDL LEENKGNVDT ITGSLSTQKG EDKENVSPEK VSTSVETRKL DRALKSQSMK GNSGFPTEVT NFKSFSTGGR TALKQSSLQA CMQKNSEVDK
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT VHFHNFKALI KNQSQES

Arabidopsis Description

TULP8TLP8 [Source:UniProtKB/TrEMBL;Acc:A0A178WHW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.