CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42631

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16070.1	KRH42631	AT2G04620.1	16792696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0018g01630.t01	Wine grape	cytosol	63.48	59.95
Solyc03g117730.2.1	Tomato	cytosol	60.67	53.2
PGSC0003DMT400036862	Potato	nucleus	58.99	50.48
CDY35067	Canola	nucleus	52.25	47.81
CDY69989	Canola	nucleus	52.53	47.7
Bra026081.1-P	Field mustard	nucleus	51.69	47.3
AT1G16070.1	Thale cress	nucleus	51.97	46.6
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	48.03	46.59
TraesCS6B01G177300.1	Wheat	plastid	50.28	45.66
HORVU6Hr1G029710.3	Barley	plastid	50.0	45.06
Zm00001d015485_P001	Maize	plastid	50.84	45.02
KXG29622	Sorghum	plastid	51.69	43.4
TraesCS6D01G138700.1	Wheat	plastid	44.1	40.26
TraesCS6A01G149400.1	Wheat	plastid	43.54	38.75
Os02t0179400-00	Rice	nucleus	32.58	28.09
KRH21017	Soybean	mitochondrion	19.94	24.48
KRH11270	Soybean	cytosol	23.31	21.56
KRH15179	Soybean	cytosol	24.44	20.57
KRH50928	Soybean	cytosol	20.22	20.06
KRH28692	Soybean	cytosol	23.31	20.05
KRH10476	Soybean	cytosol, mitochondrion	23.88	19.91
KRH43964	Soybean	cytosol, mitochondrion	23.6	19.67
KRG91652	Soybean	cytosol, mitochondrion	23.6	19.53
KRH05837	Soybean	mitochondrion	24.72	19.38
KRH76777	Soybean	cytosol	22.47	19.28
KRH35144	Soybean	cytosol, mitochondrion	23.03	19.07
KRH71532	Soybean	cytosol	21.35	19.0
KRH69894	Soybean	cytosol	21.91	18.84
KRH08239	Soybean	cytosol	21.91	18.84
KRH70303	Soybean	cytosol	21.91	18.4
KRH08694	Soybean	mitochondrion	21.91	18.4
KRH02194	Soybean	cytosol	19.66	17.86
KRH27356	Soybean	mitochondrion	18.54	17.46
KRH21960	Soybean	mitochondrion	18.54	17.32
KRH49321	Soybean	cytosol	8.43	16.39
KRH25611	Soybean	cytosol	10.11	12.2
KRH21016	Soybean	cytosol	3.37	12.0

Protein Annotations

EMBL:ACUP02008482	EnsemblPlants:KRH23693	EnsemblPlantsGene:GLYMA_13G371500	EntrezGene:100803500	Gene3D:3.20.90.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0008289	GO:GO:0035091	InterPro:IPR025659	InterPro:Tubby-like_C	InterPro:Tubby_C
PANTHER:PTHR16517	PANTHER:PTHR16517:SF27	PFAM:PF01167	PRINTS:PR01573	ProteinID:KRH23693	ProteinID:KRH23693.1
SEG:seg	SUPFAM:SSF54518	UniParc:UPI00023CF09D	UniProt:I1M601	MapMan:15.5.21	:

Description

hypothetical protein

Coordinates

chr13:-:45665835..45667907

Molecular Weight (calculated)

40006.8 Da

IEP (calculated)

10.061

GRAVY (calculated)

-0.505

Length

356 amino acids

Sequence
(BLAST)

001: MKKMNNESST RTYSSLYFNP LTTTTTAKPH HTFLFDKENS NANGSSVLPK PRPFRSLSTD MILKPCSLES QSLNLNIWDY SDSESGPASS WSTLANKSLI
101: CRPLPLDIGS CTCFIVNEPP PQGLSGGTFF SLYTNEGHGR QNRKLAVAHH KRRNGRSHFI LAQNLRGLLS HSDDSFLGTV TANLIGSKYH IWDQGYLHNS
201: RAKQPKPPLA VVTYIPTVTT CTGSHRSMRA YIPKHQTMSL KSTTQVQHIK GLPFNWEGKP DKVHQLFSKV PLYNKISKQY ELDFRDNKGK AGGGFRIQRS
301: VKNFQLTLEE NGRQTILQLG RVEKSKFVMD YSYPLTGYQA FCICLASMDA KLCCTL

Best Arabidopsis Sequence Match ( AT1G16070.1 )
(BLAST)

001: MAGSRKVNDL LEENKGNVDT ITGSLSTQKG EDKENVSPEK VSTSVETRKL DRALKSQSMK GNSGFPTEVT NFKSFSTGGR TALKQSSLQA CMQKNSEVDK
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV

Arabidopsis Description

TULP8TLP8 [Source:UniProtKB/TrEMBL;Acc:A0A178WHW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.