CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43964	Soybean	cytosol, mitochondrion	98.36	98.36
VIT_12s0055g00460.t01	Wine grape	mitochondrion	88.06	88.68
PGSC0003DMT400002858	Potato	mitochondrion	85.01	85.21
Solyc10g046970.1.1	Tomato	mitochondrion	84.78	84.98
PGSC0003DMT400076537	Potato	cytosol	84.78	84.78
Solyc01g104670.2.1	Tomato	cytosol	84.54	84.54
HORVU5Hr1G023650.1	Barley	plastid	47.54	84.23
KRH70303	Soybean	cytosol	83.61	84.2
KRH08694	Soybean	mitochondrion	83.37	83.96
KRH35144	Soybean	cytosol, mitochondrion	82.67	82.09
KRG91652	Soybean	cytosol, mitochondrion	82.67	82.09
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	78.92	78.74
CDY36119	Canola	cytosol	74.24	75.12
CDY51990	Canola	cytosol	74.24	74.94
CDX84977	Canola	cytosol	73.3	74.52
Bra010985.1-P	Field mustard	cytosol	76.58	74.49
Bra024763.1-P	Field mustard	cytosol	75.41	73.52
CDY42119	Canola	cytosol	75.18	73.46
CDY66464	Canola	cytosol	73.77	73.43
CDY72036	Canola	cytosol	75.64	72.91
Bra012486.1-P	Field mustard	cytosol	75.64	72.91
AT1G25280.1	Thale cress	cytosol	75.88	72.81
KXG23034	Sorghum	cytosol, mitochondrion	74.47	72.77
Os12t0163400-01	Rice	cytosol	75.41	72.36
KRH49321	Soybean	cytosol	30.91	72.13
TraesCS4D01G110100.1	Wheat	golgi	73.3	71.14
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	73.3	71.14
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	73.3	71.14
TraesCS5A01G124100.1	Wheat	cytosol	72.83	70.84
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	72.83	70.84
TraesCS5B01G123800.1	Wheat	golgi	72.6	70.61
Zm00001d053179_P001	Maize	cytosol	70.96	67.63
EES08030	Sorghum	cytosol, mitochondrion	70.73	66.23
KRH21017	Soybean	mitochondrion	42.62	62.76
GSMUA_Achr11P...	Banana	cytosol	60.42	62.17
KRH11270	Soybean	cytosol	52.69	58.44
KRH28692	Soybean	cytosol	55.74	57.49
KRH76777	Soybean	cytosol	55.74	57.35
KRH71532	Soybean	cytosol	53.4	57.0
KRH69894	Soybean	cytosol	54.33	56.04
KRH50928	Soybean	cytosol	46.37	55.15
KRH08239	Soybean	cytosol	53.16	54.83
KRH15179	Soybean	cytosol	53.63	54.14
KRH02194	Soybean	cytosol	46.6	50.77
KRH05837	Soybean	mitochondrion	53.4	50.22
KRH21960	Soybean	mitochondrion	44.26	49.61
KRH27356	Soybean	mitochondrion	43.79	49.47
KRH25611	Soybean	cytosol	33.96	49.15
KRH21016	Soybean	cytosol	10.77	46.0
KRH23693	Soybean	plastid	19.91	23.88

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100814578	MapMan:15.5.21	EMBL:ACUP02009142	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
EnsemblPlantsGene:GLYMA_15G049500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008289	GO:GO:0035091
UniProt:I1MDS7	InterPro:IPR001810	InterPro:IPR025659	EnsemblPlants:KRH10476	ProteinID:KRH10476	ProteinID:KRH10476.1
PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517
PANTHER:PTHR16517:SF45	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
UniParc:UPI0001D83F8D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:3899625..3904237

Molecular Weight (calculated)

47954.6 Da

IEP (calculated)

9.678

GRAVY (calculated)

-0.352

Length

427 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDSFGSLSRR SFDVRLTGHH RGKSQGSVQD LHDQPLVIQN SRWASLPPEL LFDIIRRLEE SENTWPARKH VVACAAVCQS WRNMCKDIVK
101: SPEFCGKLTF PVSLKQPGPR DGIIQCFIKR DKSNLTYHLF LCLSPALLVE NGKFLLSAKR TRRTTYTEYV ISMDADNISR SSNTYIGKLR SNFLGTKFII
201: YDTQPPYSSA HICPPGTGKT SRRFYSKKVS PKVPSGSYNI AQVTYELNVL GTRGPRKMHC VMHSIPASAL DAGGTVPGQP ELLPRSLEDS FRSISFSKSL
301: DHSIEFSSSR FSEIGESCIE DDDGKMRPLV LKNKPPRWHE QLQCWCLNFR GRVTVASVKN FQLIAATQPA AGAPTPSQPA PPEHDKIILQ FGKVGKDMFT
401: MDYRYPLSAF QAFAICLSSF DTKLACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.